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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vavilov</journal-id><journal-title-group><journal-title xml:lang="ru">Вавиловский журнал генетики и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Vavilov Journal of Genetics and Breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2500-3259</issn><publisher><publisher-name>Institute of Cytology and Genetics of Siberian Branch of the RAS</publisher-name></publisher></journal-meta><article-meta><article-id custom-type="elpub" pub-id-type="custom">vavilov-149</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>Статьи</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>РЕОРГАНИЗАЦИЯ ГЕНОМА РАСТЕНИЙ В ХОДЕ АЛЛОПОЛИПЛОИДИЗАЦИИ</article-title><trans-title-group xml:lang="en"><trans-title>THE REORGANIZATION OF PLANT GENOMES DURING ALLOPOLYPLOIDISATION</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Щербань</surname><given-names>А. Б.</given-names></name><name name-style="western" xml:lang="en"><surname>Shcherban</surname><given-names>A. B.</given-names></name></name-alternatives><email xlink:type="simple">atos@bionet.nsc.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Федеральное государственное бюджетное научное учреждение «Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук», Новосибирск, Россия<country>Россия</country></aff><aff xml:lang="en">Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2013</year></pub-date><pub-date pub-type="epub"><day>26</day><month>12</month><year>2014</year></pub-date><volume>17</volume><issue>2</issue><fpage>277</fpage><lpage>285</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Щербань А.Б., 2014</copyright-statement><copyright-year>2014</copyright-year><copyright-holder xml:lang="ru">Щербань А.Б.</copyright-holder><copyright-holder xml:lang="en">Shcherban A.B.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vavilov.elpub.ru/jour/article/view/149">https://vavilov.elpub.ru/jour/article/view/149</self-uri><abstract><p>Рассмотрены молекулярно-генетические механизмы реорганизации генома растений в процессе аллополиплоидизации. Подчеркнута особая роль ранних генетических изменений, изучение которых проводилось с использованием уникальной модели синтетических аллополиплоидов. Обобщены данные о различных геномных изменениях на ранних стадиях аллополиплоидизации, включающих активацию мобильных элементов, хромосомные перестройки, эпигенетические и транскриптомные изменения и др. Отмечено важное значение этих изменений в формировании устойчивой организации аллополиплоидного генома, обеспечивающей эволюционный успех и распространенность аллополиплоидов среди высших растений.</p></abstract><trans-abstract xml:lang="en"><p>Molecular mechanisms governing plant genome reorganization in the course of allopolyploidization are reviewed. The special role of early genetic changes, which were studied by using a unique model of synthetic allopolyploids, is emphasized. The data on various genomic changes at early stages of allopolyploidization, including activation of mobile elements, chromosomal rearrangements, epigenetic and transcriptomic changes, etc., are summarized. We note that these changes provide evolutionary success of allopolyploids and their prevalence among higher plants due to formation of stable organization of the allopolyploid genome.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>аллополиплоидия</kwd><kwd>отдаленная гибридизация</kwd><kwd>высшие растения</kwd><kwd>мобильный элемент</kwd><kwd>полимеразная цепная реакция</kwd></kwd-group><kwd-group xml:lang="en"><kwd>allopolyploids</kwd><kwd>remote hybridization</kwd><kwd>higher plants</kwd><kwd>mobile element</kwd><kwd>polymerase chain reaction</kwd></kwd-group><funding-group xml:lang="ru"><funding-statement>программа Президиума РАН «Молекулярная и клеточная биология» (проект 6.14)</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Щербань А.Б., Адонина И.Г., Салина Е.А. Вклад Ty3-gypsy ретротранспозона Lila в специфичность D-генома мягкой пшеницы Triticum aestivum L. // Молекуляр. биология. 2012. Т. 46. С. 584–593.</mixed-citation><mixed-citation xml:lang="en">Щербань А.Б., Адонина И.Г., Салина Е.А. Вклад Ty3-gypsy ретротранспозона Lila в специфичность D-генома мягкой пшеницы Triticum aestivum L. // Молекуляр. биология. 2012. Т. 46. С. 584–593.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Щербань А.Б., Сергеева Е.М., Бадаева Е.Д., Салина Е.А. Анализ изменений 5S рДНК у синтетических аллополиплоидов Triticum × Aegilops // Молекуляр. биология. 2008. Т. 42(4). С. 604–611.</mixed-citation><mixed-citation xml:lang="en">Щербань А.Б., Сергеева Е.М., Бадаева Е.Д., Салина Е.А. Анализ изменений 5S рДНК у синтетических аллополиплоидов Triticum × Aegilops // Молекуляр. биология. 2008. Т. 42(4). С. 604–611.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Adams K.L., Cronn R., Percifi eld R., Wendel J.F. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specifi c reciprocal silencing // Proc. Natl Acad. Sci. USA. 2003. V. 100. P. 4649–4654.</mixed-citation><mixed-citation xml:lang="en">Adams K.L., Cronn R., Percifi eld R., Wendel J.F. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specifi c reciprocal silencing // Proc. Natl Acad. Sci. USA. 2003. V. 100. P. 4649–4654.</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Adams K.L., Percifi eld R., Wendel J.F. Organ-specifi c silencing of duplicated genes in a newly synthesized cotton allotetraploid // Genetics. 2004. V. 168. P. 2217–2226.</mixed-citation><mixed-citation xml:lang="en">Adams K.L., Percifi eld R., Wendel J.F. Organ-specifi c silencing of duplicated genes in a newly synthesized cotton allotetraploid // Genetics. 2004. V. 168. P. 2217–2226.</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Adams K.L., Wendel J.F. Polyploidy and genome evolution in plants // Curr. Opin. Plant Biol. 2005. V. 8. P. 135–141.</mixed-citation><mixed-citation xml:lang="en">Adams K.L., Wendel J.F. Polyploidy and genome evolution in plants // Curr. Opin. Plant Biol. 2005. V. 8. P. 135–141.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Alix K., Joets J., Ryder C.D. et al. The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation // Plant J. 2008. V. 56. P. 1030–1044.</mixed-citation><mixed-citation xml:lang="en">Alix K., Joets J., Ryder C.D. et al. The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation // Plant J. 2008. V. 56. P. 1030–1044.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Beaulieu J., Jean M., Belzile F. The allotetraploid Arabidopsis thaliana – Arabidopsis lyrata subsp. petraea as an alternative model system for the study of polyploidy in plants // Mol. Genet. Genomics. 2009. V. 281. P. 421–435.</mixed-citation><mixed-citation xml:lang="en">Beaulieu J., Jean M., Belzile F. The allotetraploid Arabidopsis thaliana – Arabidopsis lyrata subsp. petraea as an alternative model system for the study of polyploidy in plants // Mol. Genet. Genomics. 2009. V. 281. P. 421–435.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Bennetzen J.L. Transposable elements, gene creation and genome rearrangement in fl owering plants // Curr. Opin. Genet. Develop. 2005. V. 15. P. 621–627.</mixed-citation><mixed-citation xml:lang="en">Bennetzen J.L. Transposable elements, gene creation and genome rearrangement in fl owering plants // Curr. Opin. Genet. Develop. 2005. V. 15. P. 621–627.</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Bento M., Pereira H.S., Rocheta M. et al. Polyploidization as a retraction force in plant genome evolution: sequence rearrangements in Triticale // PLoS ONE. 2008. V. 3. e1402.</mixed-citation><mixed-citation xml:lang="en">Bento M., Pereira H.S., Rocheta M. et al. Polyploidization as a retraction force in plant genome evolution: sequence rearrangements in Triticale // PLoS ONE. 2008. V. 3. e1402.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Buggs R.J., Elliott N.M., Zhang L. et al. Tissue-specifi c silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus // New Phytol. 2010. V. 186. P. 175–183.</mixed-citation><mixed-citation xml:lang="en">Buggs R.J., Elliott N.M., Zhang L. et al. Tissue-specifi c silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus // New Phytol. 2010. V. 186. P. 175–183.</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Chantret N., Salse J., Sabot F. et al. Molecular basis of evolutionary events that shaped the Hardness locus in diploid and polyploid wheat species (Triticum and Aegilops) // Plant Cell. 2005. V. 17. P. 1033–1045.</mixed-citation><mixed-citation xml:lang="en">Chantret N., Salse J., Sabot F. et al. Molecular basis of evolutionary events that shaped the Hardness locus in diploid and polyploid wheat species (Triticum and Aegilops) // Plant Cell. 2005. V. 17. P. 1033–1045.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Chaudhary B., Flagel L., Stupar R.M. et al. Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium) // Genetics. 2009. V. 182. P. 503–517.</mixed-citation><mixed-citation xml:lang="en">Chaudhary B., Flagel L., Stupar R.M. et al. Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium) // Genetics. 2009. V. 182. P. 503–517.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Chen Z.J., Comai L., Pikaard C.S. Gene dosage and stochastic effects determine the severity and direction of uniparental rRNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids // Proc. Natl Acad. Sci. USA. 1998. V. 95. P. 14891–14896.</mixed-citation><mixed-citation xml:lang="en">Chen Z.J., Comai L., Pikaard C.S. Gene dosage and stochastic effects determine the severity and direction of uniparental rRNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids // Proc. Natl Acad. Sci. USA. 1998. V. 95. P. 14891–14896.</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Chen Z.J., Pikaard C.S. Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica // Proc. Natl Acad. Sci. USA. 1997. V. 94. P. 3442–3447.</mixed-citation><mixed-citation xml:lang="en">Chen Z.J., Pikaard C.S. Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica // Proc. Natl Acad. Sci. USA. 1997. V. 94. P. 3442–3447.</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Chen Z., Wang J., Tian L. et al. The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects // Biol. J. Linn. Soc. 2004. V. 82. P. 689–700.</mixed-citation><mixed-citation xml:lang="en">Chen Z., Wang J., Tian L. et al. The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects // Biol. J. Linn. Soc. 2004. V. 82. P. 689–700.</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Comai L., Madlung A., Josefsson C., Tyagu A. Do the different parental ‘heteronomes’ cause genomic shock in newly formed allopolyploids? // Phil. Trans. Roy. Soc. London. 2003. Ser. B. Biological Sciences. V. 358. P. 1149–1155.</mixed-citation><mixed-citation xml:lang="en">Comai L., Madlung A., Josefsson C., Tyagu A. Do the different parental ‘heteronomes’ cause genomic shock in newly formed allopolyploids? // Phil. Trans. Roy. Soc. London. 2003. Ser. B. Biological Sciences. V. 358. P. 1149–1155.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Comai L., Tyagi A.P., Winter K. et al. Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids // Plant Cell. 2000. V. 12. P. 1551–1568.</mixed-citation><mixed-citation xml:lang="en">Comai L., Tyagi A.P., Winter K. et al. Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids // Plant Cell. 2000. V. 12. P. 1551–1568.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Des Marais D.L., Rausher M.D. Escape from adaptive conflict after duplication in an anthocyanin pathway gene // Nature. 2008. V. 454. P. 762–765.</mixed-citation><mixed-citation xml:lang="en">Des Marais D.L., Rausher M.D. Escape from adaptive conflict after duplication in an anthocyanin pathway gene // Nature. 2008. V. 454. P. 762–765.</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Dong S.W., Adams K.L. Differential contributions to the transcriptome of duplicated genes in response to abiotic stresses in natural and synthetic polyploids // New Phytol. 2011. V. 190. P. 1045–1057.</mixed-citation><mixed-citation xml:lang="en">Dong S.W., Adams K.L. Differential contributions to the transcriptome of duplicated genes in response to abiotic stresses in natural and synthetic polyploids // New Phytol. 2011. V. 190. P. 1045–1057.</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Feldman M., Liu B., Segal G. et al. Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes // Genetics. 1997. V. 147. P. 1381–1387.</mixed-citation><mixed-citation xml:lang="en">Feldman M., Liu B., Segal G. et al. Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes // Genetics. 1997. V. 147. P. 1381–1387.</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Gaeta R., Pires J. Homoeologous recombination in allopolyploids: the polyploid ratchet // New Phytol. 2010. V. 186. P. 18–28.</mixed-citation><mixed-citation xml:lang="en">Gaeta R., Pires J. Homoeologous recombination in allopolyploids: the polyploid ratchet // New Phytol. 2010. V. 186. P. 18–28.</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Gaeta R.T., Pires J.C., Iniguez-Luy F. et al. Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype // Plant Cell. 2007. V. 19. P. 3403–3417.</mixed-citation><mixed-citation xml:lang="en">Gaeta R.T., Pires J.C., Iniguez-Luy F. et al. Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype // Plant Cell. 2007. V. 19. P. 3403–3417.</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Griffi ths S., Sharp R., Foote T.N. et al. Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat // Nature. 2006. V. 439. P. 749–752.</mixed-citation><mixed-citation xml:lang="en">Griffi ths S., Sharp R., Foote T.N. et al. Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat // Nature. 2006. V. 439. P. 749–752.</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Grover C.E., Kim H., Wing R.A. et al. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium) // Plant J. 2007. V. 50. P. 995–1006.</mixed-citation><mixed-citation xml:lang="en">Grover C.E., Kim H., Wing R.A. et al. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium) // Plant J. 2007. V. 50. P. 995–1006.</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Ha M., Lu J., Tian L. et al. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecifi c hybrids and allopolyploids // Proc. Natl Acad. Sci. USA. 2009. V. 106. P. 17835–17840.</mixed-citation><mixed-citation xml:lang="en">Ha M., Lu J., Tian L. et al. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecifi c hybrids and allopolyploids // Proc. Natl Acad. Sci. USA. 2009. V. 106. P. 17835–17840.</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Han F., Fedak G., Guo W., Liu B. Rapid and repeatable elimination of a parental genome-specifi c DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids // Genetics. 2005. V. 170. P. 1239–1245.</mixed-citation><mixed-citation xml:lang="en">Han F., Fedak G., Guo W., Liu B. Rapid and repeatable elimination of a parental genome-specifi c DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids // Genetics. 2005. V. 170. P. 1239–1245.</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Hegarty M., Hiscock S. Hybrid speciation in plants: new insights from molecular studies // New Phytol. 2005. V. 165. P. 411–423.</mixed-citation><mixed-citation xml:lang="en">Hegarty M., Hiscock S. Hybrid speciation in plants: new insights from molecular studies // New Phytol. 2005. V. 165. P. 411–423.</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Hittinger C.T., Carroll S.B. Gene duplication and the adaptive evolution of a classic genetic switch // Nature. 2007. V. 449. P. 677–681.</mixed-citation><mixed-citation xml:lang="en">Hittinger C.T., Carroll S.B. Gene duplication and the adaptive evolution of a classic genetic switch // Nature. 2007. V. 449. P. 677–681.</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Hovav R., Udall J.A., Chaudhary B. et al. Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant // Proc. Natl Acad. Sci. USA. 2008. V. 105. P. 6191–6195.</mixed-citation><mixed-citation xml:lang="en">Hovav R., Udall J.A., Chaudhary B. et al. Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant // Proc. Natl Acad. Sci. USA. 2008. V. 105. P. 6191–6195.</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">Kashkush K., Feldman M., Levy A.A. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid // Genetics. 2002. V. 160. P. 1651–1659.</mixed-citation><mixed-citation xml:lang="en">Kashkush K., Feldman M., Levy A.A. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid // Genetics. 2002. V. 160. P. 1651–1659.</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Kashkush K., Feldman M., Levy A.A. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat // Nat. Genet. 2003. V. 33. P. 102–106.</mixed-citation><mixed-citation xml:lang="en">Kashkush K., Feldman M., Levy A.A. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat // Nat. Genet. 2003. V. 33. P. 102–106.</mixed-citation></citation-alternatives></ref><ref id="cit32"><label>32</label><citation-alternatives><mixed-citation xml:lang="ru">Kovarik A., Dadejova M., Lim Y.K. et al. Evolution of rDNA in Nicotiana allopolyploids: a potential link between rDNA homogenization and epigenetics // Ann. Botany. 2008. V. 101. P. 815–823.</mixed-citation><mixed-citation xml:lang="en">Kovarik A., Dadejova M., Lim Y.K. et al. Evolution of rDNA in Nicotiana allopolyploids: a potential link between rDNA homogenization and epigenetics // Ann. Botany. 2008. V. 101. P. 815–823.</mixed-citation></citation-alternatives></ref><ref id="cit33"><label>33</label><citation-alternatives><mixed-citation xml:lang="ru">Lawrence R.J., Earley K., Pontes O. et al. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance // Mol. Cell. 2004. V. 13. P. 599–609.</mixed-citation><mixed-citation xml:lang="en">Lawrence R.J., Earley K., Pontes O. et al. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance // Mol. Cell. 2004. V. 13. P. 599–609.</mixed-citation></citation-alternatives></ref><ref id="cit34"><label>34</label><citation-alternatives><mixed-citation xml:lang="ru">Leitch I., Bennett M. Polyploidy in angiosperms // Trends Plant Sci. 1997. V. 2. P. 470–476.</mixed-citation><mixed-citation xml:lang="en">Leitch I., Bennett M. Polyploidy in angiosperms // Trends Plant Sci. 1997. V. 2. P. 470–476.</mixed-citation></citation-alternatives></ref><ref id="cit35"><label>35</label><citation-alternatives><mixed-citation xml:lang="ru">Leitch I.J., Bennett M.D. Genome downsizing in polyploid plants // Biol. J. Linn. Soc. 2004. V. 82. P. 651–663.</mixed-citation><mixed-citation xml:lang="en">Leitch I.J., Bennett M.D. Genome downsizing in polyploid plants // Biol. J. Linn. Soc. 2004. V. 82. P. 651–663.</mixed-citation></citation-alternatives></ref><ref id="cit36"><label>36</label><citation-alternatives><mixed-citation xml:lang="ru">Levy A.A., Feldman M. The impact of polyploidy on grass genome evolution // Plant Physiol. 2002. V. 130. P. 1587–1593.</mixed-citation><mixed-citation xml:lang="en">Levy A.A., Feldman M. The impact of polyploidy on grass genome evolution // Plant Physiol. 2002. V. 130. P. 1587–1593.</mixed-citation></citation-alternatives></ref><ref id="cit37"><label>37</label><citation-alternatives><mixed-citation xml:lang="ru">Levy A.A., Feldman M. Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization // Biol. J. Linn. Soc. 2004. V. 82. P. 607–613.</mixed-citation><mixed-citation xml:lang="en">Levy A.A., Feldman M. Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization // Biol. J. Linn. Soc. 2004. V. 82. P. 607–613.</mixed-citation></citation-alternatives></ref><ref id="cit38"><label>38</label><citation-alternatives><mixed-citation xml:lang="ru">Lim K.Y., Kovarik A., Matyasek R. et al. Sequence of events leading to near-complete genome turnover in allopolyploid Nicotiana within fi ve million years // New Phytol. 2007. V. 175. P. 756–763.</mixed-citation><mixed-citation xml:lang="en">Lim K.Y., Kovarik A., Matyasek R. et al. Sequence of events leading to near-complete genome turnover in allopolyploid Nicotiana within fi ve million years // New Phytol. 2007. V. 175. P. 756–763.</mixed-citation></citation-alternatives></ref><ref id="cit39"><label>39</label><citation-alternatives><mixed-citation xml:lang="ru">Lippman Z., Martienssen R. The role of RNA interference in heterochromatic silencing // Nature. 2004. V. 431. P. 364–370.</mixed-citation><mixed-citation xml:lang="en">Lippman Z., Martienssen R. The role of RNA interference in heterochromatic silencing // Nature. 2004. V. 431. P. 364–370.</mixed-citation></citation-alternatives></ref><ref id="cit40"><label>40</label><citation-alternatives><mixed-citation xml:lang="ru">Liu F., Cui X., Horner H. et al. Mitochondrial aldehyde dehydrogenase activity is requires for male fertility in maize // Plant Cell. 2001. V. 13. P. 1063–1078.</mixed-citation><mixed-citation xml:lang="en">Liu F., Cui X., Horner H. et al. Mitochondrial aldehyde dehydrogenase activity is requires for male fertility in maize // Plant Cell. 2001. V. 13. P. 1063–1078.</mixed-citation></citation-alternatives></ref><ref id="cit41"><label>41</label><citation-alternatives><mixed-citation xml:lang="ru">Lukens L.N., Pires J.C., Leon E. et al. Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids // Plant Physiol. 2006. V. 140. P. 336–348.</mixed-citation><mixed-citation xml:lang="en">Lukens L.N., Pires J.C., Leon E. et al. Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids // Plant Physiol. 2006. V. 140. P. 336–348.</mixed-citation></citation-alternatives></ref><ref id="cit42"><label>42</label><citation-alternatives><mixed-citation xml:lang="ru">Lysak M.A., Berr A., Pecinka A. et al. Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species // Proc. Natl Acad. Sci. USA. 2006. V. 103. P. 5224–5229.</mixed-citation><mixed-citation xml:lang="en">Lysak M.A., Berr A., Pecinka A. et al. Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species // Proc. Natl Acad. Sci. USA. 2006. V. 103. P. 5224–5229.</mixed-citation></citation-alternatives></ref><ref id="cit43"><label>43</label><citation-alternatives><mixed-citation xml:lang="ru">Madlung A., Masuelli R.W., Watson B. et al. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids // Plant Physiol. 2002. V. 129. P. 733–746.</mixed-citation><mixed-citation xml:lang="en">Madlung A., Masuelli R.W., Watson B. et al. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids // Plant Physiol. 2002. V. 129. P. 733–746.</mixed-citation></citation-alternatives></ref><ref id="cit44"><label>44</label><citation-alternatives><mixed-citation xml:lang="ru">Madlung A., Tyagi A.P., Watson B. et al. Genomic changes in synthetic Arabidopsis polyploids // Plant J. 2005. V. 41. P. 221–230.</mixed-citation><mixed-citation xml:lang="en">Madlung A., Tyagi A.P., Watson B. et al. Genomic changes in synthetic Arabidopsis polyploids // Plant J. 2005. V. 41. P. 221–230.</mixed-citation></citation-alternatives></ref><ref id="cit45"><label>45</label><citation-alternatives><mixed-citation xml:lang="ru">Matzke M.A., Matzke A.J. Polyploidy and transposons // Trends Ecol. Evol. 1998. V. 13. P. 241.</mixed-citation><mixed-citation xml:lang="en">Matzke M.A., Matzke A.J. Polyploidy and transposons // Trends Ecol. Evol. 1998. V. 13. P. 241.</mixed-citation></citation-alternatives></ref><ref id="cit46"><label>46</label><citation-alternatives><mixed-citation xml:lang="ru">McClintock B. The signifi cance of responses of the genome to challenge // Science. 1984. V. 226. P. 792–801.</mixed-citation><mixed-citation xml:lang="en">McClintock B. The signifi cance of responses of the genome to challenge // Science. 1984. V. 226. P. 792–801.</mixed-citation></citation-alternatives></ref><ref id="cit47"><label>47</label><citation-alternatives><mixed-citation xml:lang="ru">Mudge S.R., Osabe K., Casu R.E. et al. Effi cient silencing of reporter transgenes coupled to known functional promoters in sugarcane, a highly polyploid crop species // Planta. 2009. V. 229. P. 549–558.</mixed-citation><mixed-citation xml:lang="en">Mudge S.R., Osabe K., Casu R.E. et al. Effi cient silencing of reporter transgenes coupled to known functional promoters in sugarcane, a highly polyploid crop species // Planta. 2009. V. 229. P. 549–558.</mixed-citation></citation-alternatives></ref><ref id="cit48"><label>48</label><citation-alternatives><mixed-citation xml:lang="ru">Ng R.K., Gurdon J.B. Epigenetic inheritance of cell differentiation status // Cell Cycle. 2008. V. 7. P. 1173–1177.</mixed-citation><mixed-citation xml:lang="en">Ng R.K., Gurdon J.B. Epigenetic inheritance of cell differentiation status // Cell Cycle. 2008. V. 7. P. 1173–1177.</mixed-citation></citation-alternatives></ref><ref id="cit49"><label>49</label><citation-alternatives><mixed-citation xml:lang="ru">Nicolas S.D., Lefl on M., Monod H. et al. Genetic regulation of meiotic cross-overs between related genomes in Brassica napus haploids and hybrids // Plant Cell. 2009. V. 21. P. 373–385.</mixed-citation><mixed-citation xml:lang="en">Nicolas S.D., Lefl on M., Monod H. et al. Genetic regulation of meiotic cross-overs between related genomes in Brassica napus haploids and hybrids // Plant Cell. 2009. V. 21. P. 373–385.</mixed-citation></citation-alternatives></ref><ref id="cit50"><label>50</label><citation-alternatives><mixed-citation xml:lang="ru">Ozkan H., Feldman M. Rapid cytological diploidization in newly formed allopolyploids of the wheat (Aegilops-Triticum) group // Genome. 2009. V. 52(11). P. 926–934.</mixed-citation><mixed-citation xml:lang="en">Ozkan H., Feldman M. Rapid cytological diploidization in newly formed allopolyploids of the wheat (Aegilops-Triticum) group // Genome. 2009. V. 52(11). P. 926–934.</mixed-citation></citation-alternatives></ref><ref id="cit51"><label>51</label><citation-alternatives><mixed-citation xml:lang="ru">Ozkan H., Levy A.A., Feldman M. Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops–Triticum) group // Plant Cell. 2001. V. 13. P. 1735–1747.</mixed-citation><mixed-citation xml:lang="en">Ozkan H., Levy A.A., Feldman M. Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops–Triticum) group // Plant Cell. 2001. V. 13. P. 1735–1747.</mixed-citation></citation-alternatives></ref><ref id="cit52"><label>52</label><citation-alternatives><mixed-citation xml:lang="ru">Parisod C., Alix K., Just J. et al. Impact of transposable elements on the organization and function of allopolyploid genomes // New Phytol. 2010. V. 186. P. 37–45.</mixed-citation><mixed-citation xml:lang="en">Parisod C., Alix K., Just J. et al. Impact of transposable elements on the organization and function of allopolyploid genomes // New Phytol. 2010. V. 186. P. 37–45.</mixed-citation></citation-alternatives></ref><ref id="cit53"><label>53</label><citation-alternatives><mixed-citation xml:lang="ru">Parisod C., Salmon A., Zerjal T. et al. Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina // New Phytol. 2009. V. 184. P. 1003–1015.</mixed-citation><mixed-citation xml:lang="en">Parisod C., Salmon A., Zerjal T. et al. Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina // New Phytol. 2009. V. 184. P. 1003–1015.</mixed-citation></citation-alternatives></ref><ref id="cit54"><label>54</label><citation-alternatives><mixed-citation xml:lang="ru">Parkin I.A., Sharpe A.G., Keith D.J., Lydiate D.J. Identifi cation of the A and C genomes of amphidiploid Brassica napus (oilseed rape) // Genome. 1995. V. 38. P. 1122–1131.</mixed-citation><mixed-citation xml:lang="en">Parkin I.A., Sharpe A.G., Keith D.J., Lydiate D.J. Identifi cation of the A and C genomes of amphidiploid Brassica napus (oilseed rape) // Genome. 1995. V. 38. P. 1122–1131.</mixed-citation></citation-alternatives></ref><ref id="cit55"><label>55</label><citation-alternatives><mixed-citation xml:lang="ru">Petit M., Guidat C., Daniel J. et al. Mobilization of retrotransposons in synthetic allotetraploid tobacco // New Phytol. 2010. V. 186. P. 135–147.</mixed-citation><mixed-citation xml:lang="en">Petit M., Guidat C., Daniel J. et al. Mobilization of retrotransposons in synthetic allotetraploid tobacco // New Phytol. 2010. V. 186. P. 135–147.</mixed-citation></citation-alternatives></ref><ref id="cit56"><label>56</label><citation-alternatives><mixed-citation xml:lang="ru">Pires J.C., Zhao J., Schranz M.E. et al. Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae) // Biol. J. Linn. Soc. 2004. V. 82. P. 675–688.</mixed-citation><mixed-citation xml:lang="en">Pires J.C., Zhao J., Schranz M.E. et al. Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae) // Biol. J. Linn. Soc. 2004. V. 82. P. 675–688.</mixed-citation></citation-alternatives></ref><ref id="cit57"><label>57</label><citation-alternatives><mixed-citation xml:lang="ru">Pont C., Murat F., Confolent C. et al. RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.) // Genome Biol. 2011. V. 12. P. R119.</mixed-citation><mixed-citation xml:lang="en">Pont C., Murat F., Confolent C. et al. RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.) // Genome Biol. 2011. V. 12. P. R119.</mixed-citation></citation-alternatives></ref><ref id="cit58"><label>58</label><citation-alternatives><mixed-citation xml:lang="ru">Pontes O., Neves N., Silva M. et al. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome // Proc. Natl Acad. Sci. USA. 2004. V. 101. P. 18240–18245.</mixed-citation><mixed-citation xml:lang="en">Pontes O., Neves N., Silva M. et al. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome // Proc. Natl Acad. Sci. USA. 2004. V. 101. P. 18240–18245.</mixed-citation></citation-alternatives></ref><ref id="cit59"><label>59</label><citation-alternatives><mixed-citation xml:lang="ru">Preuss S., Costa-Nunes P., Tucker S. et al. Multi-megabase silencing in nucleolar dominance results from siRNA-directed de novo DNA methylation recognized by specific methylcytosine binding proteins // Mol. Cell. 2008. V. 32. P. 673–684.</mixed-citation><mixed-citation xml:lang="en">Preuss S., Costa-Nunes P., Tucker S. et al. Multi-megabase silencing in nucleolar dominance results from siRNA-directed de novo DNA methylation recognized by specific methylcytosine binding proteins // Mol. Cell. 2008. V. 32. P. 673–684.</mixed-citation></citation-alternatives></ref><ref id="cit60"><label>60</label><citation-alternatives><mixed-citation xml:lang="ru">Preuss S., Pikaard C.S. rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch // Biochim. Biophys. Acta. 2007. V. 1769. P. 383–392.</mixed-citation><mixed-citation xml:lang="en">Preuss S., Pikaard C.S. rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch // Biochim. Biophys. Acta. 2007. V. 1769. P. 383–392.</mixed-citation></citation-alternatives></ref><ref id="cit61"><label>61</label><citation-alternatives><mixed-citation xml:lang="ru">Pumphrey M., Bai J., Laudencia-Chingcuanco D. et al. Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat // Genetics. 2009. V. 181. P. 1147–1157.</mixed-citation><mixed-citation xml:lang="en">Pumphrey M., Bai J., Laudencia-Chingcuanco D. et al. Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat // Genetics. 2009. V. 181. P. 1147–1157.</mixed-citation></citation-alternatives></ref><ref id="cit62"><label>62</label><citation-alternatives><mixed-citation xml:lang="ru">Qi B., Huang W., Zhu B. et al. Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines // BMC Biol. 2012. V. 10. P. 3.</mixed-citation><mixed-citation xml:lang="en">Qi B., Huang W., Zhu B. et al. Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines // BMC Biol. 2012. V. 10. P. 3.</mixed-citation></citation-alternatives></ref><ref id="cit63"><label>63</label><citation-alternatives><mixed-citation xml:lang="ru">Rong J., Abbey C., Bowers J.E. et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium) // Genetics. 2004. V. 166. P. 389–417.</mixed-citation><mixed-citation xml:lang="en">Rong J., Abbey C., Bowers J.E. et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium) // Genetics. 2004. V. 166. P. 389–417.</mixed-citation></citation-alternatives></ref><ref id="cit64"><label>64</label><citation-alternatives><mixed-citation xml:lang="ru">Salina E.A., Numerova A.M., Ozkan H., Feldman M. Alterations in subtelomeric tandem repeats during early stages of allopolyploidy in wheat // Genome. 2004. V. 47. P. 860–867.</mixed-citation><mixed-citation xml:lang="en">Salina E.A., Numerova A.M., Ozkan H., Feldman M. Alterations in subtelomeric tandem repeats during early stages of allopolyploidy in wheat // Genome. 2004. V. 47. P. 860–867.</mixed-citation></citation-alternatives></ref><ref id="cit65"><label>65</label><citation-alternatives><mixed-citation xml:lang="ru">Salina E.A., Sergeeva E.M., Adonina I.G. et al. The Ty3-gypsy group LTR retrotransposon Fatima: the impact on B-genome specifi city of polyploid wheats // BMC Plant Biol. 2011. V. 11. P. 99.</mixed-citation><mixed-citation xml:lang="en">Salina E.A., Sergeeva E.M., Adonina I.G. et al. The Ty3-gypsy group LTR retrotransposon Fatima: the impact on B-genome specifi city of polyploid wheats // BMC Plant Biol. 2011. V. 11. P. 99.</mixed-citation></citation-alternatives></ref><ref id="cit66"><label>66</label><citation-alternatives><mixed-citation xml:lang="ru">Sarilar V., Palacios P.M., Rousselet A. et al. Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids // New Phytol. 2013. doi: 10.1111/nph.12156.</mixed-citation><mixed-citation xml:lang="en">Sarilar V., Palacios P.M., Rousselet A. et al. Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids // New Phytol. 2013. doi: 10.1111/nph.12156.</mixed-citation></citation-alternatives></ref><ref id="cit67"><label>67</label><citation-alternatives><mixed-citation xml:lang="ru">Sergeeva E.M., Salina E.A., Adonina I.G., Chalhoub B. Evolutionary analysis of the CACTA DNA-transposon Caspar across wheat species using sequence comparison and in situ hybridization // Mol. Genet. Genomics. 2010. V. 284. P. 11–23.</mixed-citation><mixed-citation xml:lang="en">Sergeeva E.M., Salina E.A., Adonina I.G., Chalhoub B. Evolutionary analysis of the CACTA DNA-transposon Caspar across wheat species using sequence comparison and in situ hybridization // Mol. Genet. Genomics. 2010. V. 284. P. 11–23.</mixed-citation></citation-alternatives></ref><ref id="cit68"><label>68</label><citation-alternatives><mixed-citation xml:lang="ru">Shaked H., Kashkush K., Ozkan H. et al. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat // Plant Cell. 2001. V. 13. P. 1749–1759.</mixed-citation><mixed-citation xml:lang="en">Shaked H., Kashkush K., Ozkan H. et al. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat // Plant Cell. 2001. V. 13. P. 1749–1759.</mixed-citation></citation-alternatives></ref><ref id="cit69"><label>69</label><citation-alternatives><mixed-citation xml:lang="ru">Shcherban A.B., Badaeva E.D., Amosova A.V. et al. Genetic and epigenetic changes of rDNA in a synthetic allotetraploid Aegilops sharonensis × Ae. umbellulata // Genome. 2008. V. 51. P. 261–271.</mixed-citation><mixed-citation xml:lang="en">Shcherban A.B., Badaeva E.D., Amosova A.V. et al. Genetic and epigenetic changes of rDNA in a synthetic allotetraploid Aegilops sharonensis × Ae. umbellulata // Genome. 2008. V. 51. P. 261–271.</mixed-citation></citation-alternatives></ref><ref id="cit70"><label>70</label><citation-alternatives><mixed-citation xml:lang="ru">Slotkin R.K., Martienssen R. Transposable elements and the epigenetic regulation of the genome // Nature Rev. Genet. 2007. V. 8. P. 272–285.</mixed-citation><mixed-citation xml:lang="en">Slotkin R.K., Martienssen R. Transposable elements and the epigenetic regulation of the genome // Nature Rev. Genet. 2007. V. 8. P. 272–285.</mixed-citation></citation-alternatives></ref><ref id="cit71"><label>71</label><citation-alternatives><mixed-citation xml:lang="ru">Song K.M., Lu P., Tang K.L., Osborn T.C. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution // Proc. Natl Acad. Sci. USA. 1995. V. 92. P. 7719–7723.</mixed-citation><mixed-citation xml:lang="en">Song K.M., Lu P., Tang K.L., Osborn T.C. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution // Proc. Natl Acad. Sci. USA. 1995. V. 92. P. 7719–7723.</mixed-citation></citation-alternatives></ref><ref id="cit72"><label>72</label><citation-alternatives><mixed-citation xml:lang="ru">Stebbins G.L. Chromosomal evolution in higher plants. London, UK: Edward Arnold, 1971.</mixed-citation><mixed-citation xml:lang="en">Stebbins G.L. Chromosomal evolution in higher plants. London, UK: Edward Arnold, 1971.</mixed-citation></citation-alternatives></ref><ref id="cit73"><label>73</label><citation-alternatives><mixed-citation xml:lang="ru">Tate J.A., Symonds V.V., Doust A.N. et al. Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 years after Ownbey’s discovery // Amer. J. Bot. 2009. V. 96. P. 979–988.</mixed-citation><mixed-citation xml:lang="en">Tate J.A., Symonds V.V., Doust A.N. et al. Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 years after Ownbey’s discovery // Amer. J. Bot. 2009. V. 96. P. 979–988.</mixed-citation></citation-alternatives></ref><ref id="cit74"><label>74</label><citation-alternatives><mixed-citation xml:lang="ru">Throude M., Bolot S., Bosio M. et al. Structure and expression analysis of rice paleo duplications // Nucl. Acids Res. 2009. V. 37. P. 1248–1259.</mixed-citation><mixed-citation xml:lang="en">Throude M., Bolot S., Bosio M. et al. Structure and expression analysis of rice paleo duplications // Nucl. Acids Res. 2009. V. 37. P. 1248–1259.</mixed-citation></citation-alternatives></ref><ref id="cit75"><label>75</label><citation-alternatives><mixed-citation xml:lang="ru">Tsukahara S., Kobayashi A., Kawabe A. et al. Bursts of retrotransposition reproduced in Arabidopsis // Nature. 2009. V. 461. P. 423–426.</mixed-citation><mixed-citation xml:lang="en">Tsukahara S., Kobayashi A., Kawabe A. et al. Bursts of retrotransposition reproduced in Arabidopsis // Nature. 2009. V. 461. P. 423–426.</mixed-citation></citation-alternatives></ref><ref id="cit76"><label>76</label><citation-alternatives><mixed-citation xml:lang="ru">Walsh B. Population-genetic models of the fates of duplicate genes // Genetica. 2003. V. 118. P. 279–294.</mixed-citation><mixed-citation xml:lang="en">Walsh B. Population-genetic models of the fates of duplicate genes // Genetica. 2003. V. 118. P. 279–294.</mixed-citation></citation-alternatives></ref><ref id="cit77"><label>77</label><citation-alternatives><mixed-citation xml:lang="ru">Wang J., Tian L., Lee H.S. et al. Genome wide nonadditive gene regulation in Arabidopsis allotetraploids // Genetics. 2006. V. 172. P. 507–517.</mixed-citation><mixed-citation xml:lang="en">Wang J., Tian L., Lee H.S. et al. Genome wide nonadditive gene regulation in Arabidopsis allotetraploids // Genetics. 2006. V. 172. P. 507–517.</mixed-citation></citation-alternatives></ref><ref id="cit78"><label>78</label><citation-alternatives><mixed-citation xml:lang="ru">Wendel J.F. Genome evolution in polyploids // Plant Mol. Biol. 2000. V. 42. P. 225–249.</mixed-citation><mixed-citation xml:lang="en">Wendel J.F. Genome evolution in polyploids // Plant Mol. Biol. 2000. V. 42. P. 225–249.</mixed-citation></citation-alternatives></ref><ref id="cit79"><label>79</label><citation-alternatives><mixed-citation xml:lang="ru">Zhao X.P., Si Y., Hanson R.E. et al. Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton // Genome Res. 1998. V. 8. P. 479–492.</mixed-citation><mixed-citation xml:lang="en">Zhao X.P., Si Y., Hanson R.E. et al. Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton // Genome Res. 1998. V. 8. P. 479–492.</mixed-citation></citation-alternatives></ref><ref id="cit80"><label>80</label><citation-alternatives><mixed-citation xml:lang="ru">Zhuang Y., Chen J.F. Changes of gene expression in early generations of the synthetic allotetraploid Cucumis × hytivus Chen et Kirkbride // Genet. Res. Crop Evol. 2009. V. 56. P. 1071–1076.</mixed-citation><mixed-citation xml:lang="en">Zhuang Y., Chen J.F. Changes of gene expression in early generations of the synthetic allotetraploid Cucumis × hytivus Chen et Kirkbride // Genet. Res. Crop Evol. 2009. V. 56. P. 1071–1076.</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
