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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vavilov</journal-id><journal-title-group><journal-title xml:lang="ru">Вавиловский журнал генетики и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Vavilov Journal of Genetics and Breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2500-3259</issn><publisher><publisher-name>Institute of Cytology and Genetics of Siberian Branch of the RAS</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18699/VJ21.096</article-id><article-id custom-type="elpub" pub-id-type="custom">vavilov-3201</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ГЕНЕТИКА ЖИВОТНЫХ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>ANIMAL GENETICS</subject></subj-group></article-categories><title-group><article-title>Оценка генетического разнообразия и филогенетических отношений чернопестрого скота Новосибирской области с использованием микросателлитных маркеров</article-title><trans-title-group xml:lang="en"><trans-title>Assessment of genetic diversity and phylogenetic relationships in Black Pied cattle in the Novosibirsk Region using microsatellite markers</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6929-7648</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Айтназаров</surname><given-names>Р. Б.</given-names></name><name name-style="western" xml:lang="en"><surname>Aitnazarov</surname><given-names>R. B.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск, Россия</p></bio><bio xml:lang="en"><p>Novosibirsk, Russia</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Мишакова</surname><given-names>Т. М.</given-names></name><name name-style="western" xml:lang="en"><surname>Mishakova</surname><given-names>T. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск, Россия</p></bio><bio xml:lang="en"><p>Novosibirsk, Russia</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1947-5554</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Юдин</surname><given-names>Н. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Yudin</surname><given-names>N. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск, Россия</p></bio><bio xml:lang="en"><p>Novosibirsk, Russia</p></bio><email xlink:type="simple">yudin@bionet.nsc.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук<country>Россия</country></aff><aff xml:lang="en">Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2021</year></pub-date><pub-date pub-type="epub"><day>01</day><month>01</month><year>2022</year></pub-date><volume>25</volume><issue>8</issue><elocation-id>831-­838</elocation-id><permissions><copyright-statement>Copyright &amp;#x00A9; Айтназаров Р.Б., Мишакова Т.М., Юдин Н.С., 2022</copyright-statement><copyright-year>2022</copyright-year><copyright-holder xml:lang="ru">Айтназаров Р.Б., Мишакова Т.М., Юдин Н.С.</copyright-holder><copyright-holder xml:lang="en">Aitnazarov R.B., Mishakova T.M., Yudin N.S.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vavilov.elpub.ru/jour/article/view/3201">https://vavilov.elpub.ru/jour/article/view/3201</self-uri><abstract><p>В настоящее время известно более 1000 аборигенных пород крупного рогатого скота, которые хорошо приспособлены к местным условиям среды благодаря длительной адаптации и селекции. Крайне актуально выявление генетических вариантов, контролирующих адаптацию местного скота, для переноса этих вариантов в геномы высокопродуктивных глобальных пород. Исследования отдельных популяций внутри одной породы с помощью микросателлитных маркеров позволяют оценить их генетическое разнообразие, родственные взаимоотношения и перспективы их использования для улучшения породы. Черно­пестрая порода – наиболее массовая порода крупного рогатого скота молочного направления на территории России. Однако имеются лишь единичные работы, посвященные изучению генетического разнообразия местных популяций этой породы в отдельных областях России. Целью работы являются: анализ генетического разнообразия популяций черно­пестрого скота Новосибирской области и их сравнение с другими российскими популяциями; идентификация популяций, существенно отличающихся от всех остальных, для их дальнейшего использования в программах по сохранению генетического разнообразия отечественной черно­пестрой породы. Образцы ДНК от 4788 животных черно­пестрой породы из шести племенных хозяйств Новосибирской области были исследованы по 11 микросателлитным маркерам. Значения всех показателей генетической изменчивости достоверно не различались между отдельными популяциями. Приватные аллели были обнаружены в пяти популяциях из шести. В пяти популяциях коэффициент инбридинга FIS был достоверно ниже нуля, что говорит об избытке гетерозигот. Результаты теста распределения по популяциям, анализа методом главных компонент, анализа показателей FST и DEST, а также кластерного и филогенетического анализов свидетельствуют о генетической обособленности двух популяций от всех остальных. Таким образом, параметры генетического разнообразия исследованных нами шести популяций черно­пестрого скота Новосибирской области существенно не отличаются от других российских популяций данной породы. В большинстве этих хозяйств наблюдается избыток гетерозигот, что говорит о низкой степени инбридинга. При разработке мероприятий, направленных на сохранение генетического разнообразия отечественного черно­пестрого скота, мы рекомендуем использовать животных из двух популяций, которые по генетическим характеристикам существенно отличаются от других.</p></abstract><trans-abstract xml:lang="en"><p>There are currently over a thousand indigenous cattle breeds well adapted to local habitat conditions thanks to their long history of evolution and breeding. Identification of the genetic variations controlling the adaptation of local cattle breeds for their further introduction into the genome of highly productive global breeds is a matter of great relevance. Studying individual populations of the same breed with the use of microsatellite markers makes it possible to assess their genetic diversity, relationships, and breed improvement potential. Although the Black Pied breed is the most common dairy cattle breed in Russia, there are only a few studies on genetic diversity in local Black Pied populations in some Russian regions. The goal of the present study was to analyze the genetic diversity in Black Pied cattle populations in the Novosibirsk Region and compare them with other Russian populations; to identify significantly divergent populations with a view to preserving them under the programs aimed at maintaining the genetic diversity of the domestic Black Pied breed. DNA samples from 4788 animals of the Black Pied breed from six breeding enterprises in the Novosibirsk Region have been studied using 11 microsatellite markers. No significant differences in genetic variability parameters were found between individual populations. Private alleles have been identified in five out of six populations. Five populations have shown inbreeding coefficient values (FIS) below zero, which indicates heterozygosity excess. The population distribution test, principal component analysis, FST and DEST values, cluster analysis, and phylogenetic analysis have revealed two populations genetically distinct from the others. Essentially, the genetic diversity parameters of the six studied Black Pied cattle populations from the Novosibirsk Region show no significant differences from other Russian populations of the breed. Excess heterozygosity is observed in most breeding enterprises, which is a sign of a low inbreeding rate. To maintain the genetic diversity of the Russian Black Pied cattle, we recommend focusing on the two populations with significant genetic distinctions from the others.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>крупный рогатый скот</kwd><kwd>черно­пестрая порода</kwd><kwd>Новосибирская область</kwd><kwd>микросателлит</kwd><kwd>генетическое разнообразие</kwd><kwd>сохранение биоразнообразия</kwd></kwd-group><kwd-group xml:lang="en"><kwd>cattle</kwd><kwd>Black Pied breed</kwd><kwd>Novosibirsk Region</kwd><kwd>microsatellite</kwd><kwd>genetic diversity</kwd><kwd>diversity preservation</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Agung P.P., Saputra F., Septian W.A., Lusiana Zein M.S., Sulandari S., Anwar S., Wulandari A.S., Said S., Tappa B. Study of genetic diversity among Simmental cross cattle in West Sumatra based on microsatellite markers. Asian-Australas. J. 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