vavilovВавиловский журнал генетики и селекцииVavilov Journal of Genetics and Breeding2500-3259Institute of Cytology and Genetics of Siberian Branch of the RASvavilov-338Research ArticleСтатьиArticlesHIGH-PERFORMANCE SIMULATIONS OF POPULATION-GENETIC PROCESSES IN BACTERIAL COMMUNITIES USING THE HAPLOID EVOLUTIONARY CONSTRUCTOR SOFTWAREHIGH-PERFORMANCE SIMULATIONS OF POPULATION-GENETIC PROCESSES IN BACTERIAL COMMUNITIES USING THE HAPLOID EVOLUTIONARY CONSTRUCTOR SOFTWAREMustafinZ. S.MustafinZ. S.lashin@bionet.nsc.ruMatushkinYu. G.MatushkinYu. G.lashin@bionet.nsc.ruLashinS. A.LashinS. A.lashin@bionet.nsc.ruThe Federal research center Institute of cytology and genetics the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, RussiaРоссияInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaRussian FederationInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaРоссияInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaRussian Federation201422012015184/210391045Copyright © Mustafin Z.S., Matushkin Y.G., Lashin S.A., 20152015Mustafin Z.S., Matushkin Y.G., Lashin S.A.Mustafin Z.S., Matushkin Y.G., Lashin S.A.This work is licensed under a Creative Commons Attribution 4.0 License.https://vavilov.elpub.ru/jour/article/view/338

Three high-performance versions of the Haploid Evolutionary Constructor program are presented (http://evol-constructor.bionet.nsc.ru). The software was designed for simulating the functioning and evolution of microbial communities. These high-performance versions are to be run on systems with shared and distributed memory, using CPU and/or GPU. Almost linear acceleration has been achieved on clusters and multi-core CPU. On GPU systems, the simulation time was reduced to several minutes (dozens of hours on CPU).

Three high-performance versions of the Haploid Evolutionary Constructor program are presented (http://evol-constructor.bionet.nsc.ru). The software was designed for simulating the functioning and evolution of microbial communities. These high-performance versions are to be run on systems with shared and distributed memory, using CPU and/or GPU. Almost linear acceleration has been achieved on clusters and multi-core CPU. On GPU systems, the simulation time was reduced to several minutes (dozens of hours on CPU).

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The authors declare that there are no conflicts of interest present.