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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vavilov</journal-id><journal-title-group><journal-title xml:lang="ru">Вавиловский журнал генетики и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Vavilov Journal of Genetics and Breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2500-3259</issn><publisher><publisher-name>Institute of Cytology and Genetics of Siberian Branch of the RAS</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18699/vjgb-24-107</article-id><article-id custom-type="elpub" pub-id-type="custom">vavilov-4421</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>БИОМЕДИЦИНА</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>BIOMEDICINE</subject></subj-group></article-categories><title-group><article-title>База данных о генах и белках, ассоциированных с нарушениями метаболизма глюкозы (GlucoGenes®): описание и возможности применения в биоинформатических исследованиях</article-title><trans-title-group xml:lang="en"><trans-title>GlucoGenes®, a database of genes and proteins associated with glucose metabolism disorders, its description and applications in bioinformatics research</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5407-8722</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Климонтов</surname><given-names>В. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Klimontov</surname><given-names>V. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск</p></bio><bio xml:lang="en"><p>Novosibirsk</p></bio><email xlink:type="simple">klimontov@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5552-9508</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шишин</surname><given-names>К. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Shishin</surname><given-names>K. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск</p></bio><bio xml:lang="en"><p>Novosibirsk</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Иванов</surname><given-names>Р. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Ivanov</surname><given-names>R. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск</p></bio><bio xml:lang="en"><p>Novosibirsk</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-1663-318X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Пономаренко</surname><given-names>М. П.</given-names></name><name name-style="western" xml:lang="en"><surname>Ponomarenko</surname><given-names>M. P.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск</p></bio><bio xml:lang="en"><p>Novosibirsk</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0009-0006-3933-208X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Золотарева</surname><given-names>К. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Zolotareva</surname><given-names>K. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск</p></bio><bio xml:lang="en"><p>Novosibirsk</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3138-381X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Лашин</surname><given-names>С. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Lashin</surname><given-names>S. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Новосибирск</p></bio><bio xml:lang="en"><p>Novosibirsk</p></bio><xref ref-type="aff" rid="aff-3"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Научно-исследовательский институт клинической и экспериментальной лимфологии – филиал Федерального исследовательского центра Институт цитологии и генетики Сибирского отделения Российской академии наук<country>Россия</country></aff><aff xml:lang="en">Research Institute of Clinical and Experimental Lymphology – Branch of the Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru">Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук<country>Россия</country></aff><aff xml:lang="en">Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences<country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru">Научно-исследовательский институт клинической и экспериментальной лимфологии – филиал Федерального исследовательского центра Институт цитологии и генетики Сибирского отделения Российской академии наук;&#13;
Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук<country>Россия</country></aff><aff xml:lang="en">Research Institute of Clinical and Experimental Lymphology – Branch of the Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences;&#13;
Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2024</year></pub-date><pub-date pub-type="epub"><day>26</day><month>01</month><year>2025</year></pub-date><volume>28</volume><issue>8</issue><fpage>1008</fpage><lpage>1017</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Климонтов В.В., Шишин К.С., Иванов Р.А., Пономаренко М.П., Золотарева К.А., Лашин С.А., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Климонтов В.В., Шишин К.С., Иванов Р.А., Пономаренко М.П., Золотарева К.А., Лашин С.А.</copyright-holder><copyright-holder xml:lang="en">Klimontov V.V., Shishin K.S., Ivanov R.A., Ponomarenko M.P., Zolotareva K.A., Lashin S.A.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vavilov.elpub.ru/jour/article/view/4421">https://vavilov.elpub.ru/jour/article/view/4421</self-uri><abstract><p>Данные в области генетики и молекулярной биологии сахарного диабета стремительно накапливаются. Это ставит задачу создания исследовательских инструментов для быстрого поиска, структурирования и анализа информации в этой области. Мы разработали базу данных о генах и белках человека, ассоциированных с высоким уровнем глюкозы (гипергликемией), низким уровнем глюкозы (гипогликемией) и обоими нарушениями. Сведения были собраны с помощью текст-майнинга научных публикаций, проиндексированных в PubMed и PubMed Central, и анализа генных сетей гипергликемии, гипогликемии и вариабельности гликемии, выполненного с помощью биоинформатической системы ANDSystems. Созданный ресурс (GlucoGenes®) доступен по адресу: https://glucogenes.sysbio.ru/genes/main. Ресурс предоставляет информацию о генах и белках, связанных с риском развития гипергликемии и гипогликемии; регуляторных молекулах с гипергликемической и антигипергликемической активностью; генах, экспрессия которых повышается при высоком и/или низком уровне глюкозы; генах, экспрессия которых снижается при высоком и/или низком уровне глюкозы, а также о молекулах, связанных с нарушениями метаболизма глюкозы иным образом. На основе ресурса проведен эволюционный анализ генов, ассоциированных с нарушениями метаболизма глюкозы. Результаты анализа выявили значительное увеличение (до 40 %) доли генов, имеющих филостратиграфический индекс (phylostratigraphy age index, PAI), соответствующий времени происхождения многоклеточных организмов. Анализ консервативности последовательностей белков по индексу дивергенции (divergency index, DI) показал, что большинство соответствующих генов высококонсервативны (DI &lt; 0.6) или консервативны (DI &lt; 1). При анализе однонуклеотидного полиморфизма (SNP) в проксимальных районах промоторов, влияющих на сродство ТАТА-связывающего белка, в базе данных GlucoGenes® найден 181 SNPмаркер, который может снижать (45 SNP-маркеров) или повышать (136 SNР-маркеров) экспрессию 52 генов. Мы полагаем, что разработанный ресурс станет полезным инструментом для дальнейших исследований в области молекулярной биологии диабета.</p></abstract><trans-abstract xml:lang="en"><p>Data on the genetics and molecular biology of diabetes are accumulating rapidly. This poses the challenge of creating research tools for a rapid search for, structuring and analysis of information in this field. We have developed a web resource, GlucoGenes®, which includes a database and an Internet portal of genes and proteins associated with high glucose (hyperglycemia), low glucose (hypoglycemia), and both metabolic disorders. The data were collected using text mining of the publications indexed in PubMed and PubMed Central and analysis of gene networks associated with hyperglycemia, hypoglycemia and glucose variability performed with ANDSystems, a bioinformatics tool. GlucoGenes® is freely available at: https://glucogenes.sysbio.ru/genes/main. GlucoGenes® enables users to access and download information about genes and proteins associated with the risk of hyperglycemia and hypoglycemia, molecular regulators with hyperglycemic and antihyperglycemic activity, genes up-regulated by high glucose and/or low glucose, genes down-regulated by high glucose and/or low glucose, and molecules otherwise associated with the glucose metabolism disorders. With GlucoGenes®, an evolutionary analysis of genes associated with glucose metabolism disorders was performed. The results of the analysis revealed a significant increase (up to 40 %) in the proportion of genes with phylostratigraphic age index (PAI) values corresponding to the time of origin of multicellular organisms. Analysis of sequence conservation using the divergence index (DI) showed that most of the corresponding genes are highly conserved (DI &lt; 0.6) or conservative (DI &lt; 1). When analyzing single nucleotide polymorphism (SNP) in the proximal regions of promoters affecting the affinity of the TATA-binding protein, 181 SNP markers were found in the GlucoGenes® database, which can reduce (45 SNP markers) or increase (136 SNP markers) the expression of 52 genes. We believe that this resource will be a useful tool for further research in the field of molecular biology of diabetes.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>ген</kwd><kwd>белок</kwd><kwd>cахарный диабет</kwd><kwd>гипергликемия</kwd><kwd>гипогликемия</kwd><kwd>вариабельность глюкозы</kwd><kwd>база данных</kwd><kwd>филостратиграфический индекс</kwd><kwd>однонуклеотидный полиморфизм</kwd></kwd-group><kwd-group xml:lang="en"><kwd>gene</kwd><kwd>protein</kwd><kwd>diabetes mellitus</kwd><kwd>hyperglycemia</kwd><kwd>hypoglycemia</kwd><kwd>glucose variability</kwd><kwd>database</kwd><kwd>phylostratigraphic index</kwd><kwd>single nucleotide polymorphism</kwd></kwd-group><funding-group xml:lang="en"><funding-statement>The sections on evolutionary analysis of genes and SNP analysis were performed using the Bioinformatics Sharing Centre supported by Budget Project No. FWNR-2022-0006. The authors express their sincere gratitude to O.V. Saik (RICEL – branch of ICG SB RAS) for her significant contribution to data collection and valuable advice on the development of the database. We also thank A.M. Mukhin (ICG SB RAS) for technical assistance in creating the web resource.</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Ceriello A., Monnier L., Owens D. Glycaemic variability in diabetes: clinical and therapeutic implications. Lancet Diabetes Endocrinol. 2019;7(3):221-230. doi 10.1016/S2213-8587(18)30136-0</mixed-citation><mixed-citation xml:lang="en">Ceriello A., Monnier L., Owens D. Glycaemic variability in diabetes: clinical and therapeutic implications. 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