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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vavilov</journal-id><journal-title-group><journal-title xml:lang="ru">Вавиловский журнал генетики и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Vavilov Journal of Genetics and Breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2500-3259</issn><publisher><publisher-name>Institute of Cytology and Genetics of Siberian Branch of the RAS</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18699/vjgb-25-95</article-id><article-id custom-type="elpub" pub-id-type="custom">vavilov-4815</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ФИЛОГЕНЕТИКА</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>HIGH-THROUGHPUT PHENOTYPING</subject></subj-group></article-categories><title-group><article-title>Полные последовательности пластомов видов Lonicera L.: значение для филогении и сравнительный анализ</article-title><trans-title-group xml:lang="en"><trans-title>Complete plastome sequences of Lonicera L. species: implications for phylogeny and comparative analysis</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Альмерекова</surname><given-names>Ш. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Almerekova</surname><given-names>S. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p> Алматы </p></bio><bio xml:lang="en"><p> Almaty </p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ермагамбетова</surname><given-names>М. М.</given-names></name><name name-style="western" xml:lang="en"><surname>Yermagambetova</surname><given-names>M. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p> Алматы </p></bio><bio xml:lang="en"><p> Almaty </p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ерболатов</surname><given-names>Д. Е.</given-names></name><name name-style="western" xml:lang="en"><surname>Yerbolatov</surname><given-names>D. Y.</given-names></name></name-alternatives><bio xml:lang="ru"><p> Алматы </p></bio><bio xml:lang="en"><p> Almaty </p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ишмуратова</surname><given-names>М. Ю.</given-names></name><name name-style="western" xml:lang="en"><surname>Ishmuratova</surname><given-names>M. Y.</given-names></name></name-alternatives><bio xml:lang="ru"><p> Караганда </p></bio><bio xml:lang="en"><p> Karaganda </p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Туруспеков</surname><given-names>Е. К.</given-names></name><name name-style="western" xml:lang="en"><surname>Turuspekov</surname><given-names>Y. K.</given-names></name></name-alternatives><bio xml:lang="ru"><p> Алматы </p></bio><bio xml:lang="en"><p> Almaty </p><p> Karaganda </p></bio><email xlink:type="simple">yerlant@yahoo.com</email><xref ref-type="aff" rid="aff-3"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Институт биологии и биотехнологии растений,<country>Казахстан</country></aff><aff xml:lang="en">Institute of Plant Biology and Biotechnology<country>Kazakhstan</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru">Карагандинский университет им. академика Е.А. Букетова<country>Казахстан</country></aff><aff xml:lang="en">Karaganda Buketov University<country>Kazakhstan</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru">Институт биологии и биотехнологии растений,<country>Казахстан</country></aff><aff xml:lang="en">Institute of Plant Biology and Biotechnology; Karaganda Buketov University<country>Kazakhstan</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2025</year></pub-date><pub-date pub-type="epub"><day>09</day><month>10</month><year>2025</year></pub-date><volume>29</volume><issue>6</issue><fpage>883</fpage><lpage>895</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Альмерекова Ш.С., Ермагамбетова М.М., Ерболатов Д.Е., Ишмуратова М.Ю., Туруспеков Е.К., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Альмерекова Ш.С., Ермагамбетова М.М., Ерболатов Д.Е., Ишмуратова М.Ю., Туруспеков Е.К.</copyright-holder><copyright-holder xml:lang="en">Almerekova S.S., Yermagambetova M.M., Yerbolatov D.Y., Ishmuratova M.Y., Turuspekov Y.K.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vavilov.elpub.ru/jour/article/view/4815">https://vavilov.elpub.ru/jour/article/view/4815</self-uri><abstract><p>Род Lonicera L. – один из крупнейших и экономически значимых в семействе Caprifoliaceae Juss., таксономия которого остается спорной. С целью внесения вклада в молекулярную таксономию данного рода мы секвенировали пластомы видов Lonicera – L. caerulea (два подвида), L. tatarica и L. micrantha – с использованием технологии секвенирования нового поколения и провели сравнительный анализ. Размеры пластомов варьировали от 153 985 п. н. у L. micrantha до 164 000 п. н. у L. caerulea subsp. pallasii; каждый пластом содержал 130 генов, включая 85 генов, кодирующих белок, 37 тРНК и 8 рРНК генов. Пять белок-кодирующих (rps7, rps12, ndhB, ycf2 и ycf15), 7 тРНК (trnA-UGC, trnI-CAU, trnI-GAU, trnL-CAA, trnN-GUU, trnR-ACG и trnV-GAC) и 4 рРНК (rrn4.5, rrn5, rrn16 и rrn23) гена были дуплицированы. Сравнительный анализ границ пластомов у видов Lonicera выявил структурные вариации у L. caerulea subsp. altaica и L. caerulea subsp. pallasii, особенно в распределении гена ndhA. Были идентифицированы три высоковариабельные области: две межгенные (ycf1-trnN-GUU и trnN-GUUndhF) и одна генная (accD). В четырех пластомах обнаружено всего 641 простая повторяющаяся последовательность (SSR). Филогенетический анализ сгруппировал образцы Lonicera в два клада, соответствующих подродам Periclymenum и Chamaecerasus. В настоящем исследовании впервые секвенированы пластидные геномы двух подвидов L. caerulea и вида L. micrantha. Древо, построенное методом maximum likelihood на основе полных последовательностей пластомов, оказалось наиболее информативным и демонстрировало топологию, согласующуюся с предыдущими исследованиями. Нуклеотидные последовательности вариабельных регионов (accD-ycf1-ndhF-trnN-GUU) обладают высоким потенциалом для использования в ДНК-баркодировании и могут служить ценными молекулярными маркерами для филогенетических исследований видов внутри рода Lonicera.</p></abstract><trans-abstract xml:lang="en"><p>Lonicera L. is one of the largest and economically significant genera in the family Caprifoliaceae Juss., with a controversial taxonomy. To contribute to its molecular taxonomy, we sequenced the plastomes of Lonicera species: Lonicera caerulea (two subspecies), L. tatarica, and L. micrantha – using next-generation sequencing technology and conducted a comparative analysis. Plastome sizes ranged from 153,985 bp in L. micrantha to 164,000 bp in L. caerulea subsp. pallasii, each containing 130 genes, including 85 protein-coding, 37 tRNA, and 8 rRNA genes. Five protein-coding (rps7, rps12, ndhB, ycf2, and ycf15), 7 tRNA (trnA-UGC, trnI-CAU, trnI-GAU, trnL-CAA, trnN-GUU, trnR-ACG, and trnV-GAC), and 4 rRNA (rrn4.5, rrn5, rrn16, and rrn23) genes were duplicated. Comparative analysis of Lonicera plastome boundaries revealed structural variations in L. caerulea subsp. altaica and L. caerulea subsp. pallasii, particularly in ndhA gene distribution. Three highly variable, two intergenic (ycf1-trnN-GUU and trnN-GUU-ndhF) and one genic (accD) region were identified. A total of 641 simple sequence repeats were detected in four plastomes. Phylogenetic analyses grouped Lonicera samples into two clades corresponding to subgenera Periclymenum and Chamaecerasus. In this study, the plastid genomes of two subspecies of L. caerulea and species L. micrantha were sequenced for the first time. The maximum likelihood tree derived from complete plastid genome sequences proved to be the most informative, showing a topology consistent with previous studies. The nucleotide sequences of variable regions (accD-ycf1-ndhF-trnN-GUU) demonstrate high potential for use in DNA barcoding and may serve as valuable molecular markers for species phylogenetic studies within the genus Lonicera.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>Lonicera</kwd><kwd>Kazakhstan</kwd><kwd>next-generation sequencing</kwd><kwd>variable regions</kwd><kwd>DNA-barcoding markers</kwd><kwd>simple sequence repeats</kwd></kwd-group><kwd-group xml:lang="en"><kwd>Lonicera</kwd><kwd>Kazakhstan</kwd><kwd>next-generation sequencing</kwd><kwd>variable regions</kwd><kwd>DNA-barcoding markers</kwd><kwd>simple sequence repeats</kwd></kwd-group><funding-group xml:lang="ru"><funding-statement>This research has been funded by the Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan (Grant No. BR21882166).</funding-statement></funding-group><funding-group xml:lang="en"><funding-statement>This research has been funded by the Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan (Grant No. BR21882166).</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Abdulina S.A. 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