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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vavilov</journal-id><journal-title-group><journal-title xml:lang="ru">Вавиловский журнал генетики и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Vavilov Journal of Genetics and Breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2500-3259</issn><publisher><publisher-name>Institute of Cytology and Genetics of Siberian Branch of the RAS</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18699/vjgb-26-36</article-id><article-id custom-type="elpub" pub-id-type="custom">vavilov-5049</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ЦИФРОВОЕ ФЕНОТИПИРОВАНИЕ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>DIGITAL PHENOTYPING</subject></subj-group></article-categories><title-group><article-title>Применимость инструмента для анализа временных рядов StatFaRmer при цифровом фенотипировании сои (Glycine max)</article-title><trans-title-group xml:lang="en"><trans-title>Applicability of the StatFaRmer time series analysis tool in soybean (Glycine max) digital phenotyping</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ульянов</surname><given-names>Д. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Ulyanov</surname><given-names>D. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><email xlink:type="simple">uldas1508@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ульянова</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Ulyanova</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Кочешкова</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Kocheshkova</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Блинков</surname><given-names>А. О.</given-names></name><name name-style="western" xml:lang="en"><surname>Blinkov</surname><given-names>A. O.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Архипов</surname><given-names>А. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Arkhipov</surname><given-names>A. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Меглицкая</surname><given-names>Я. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Meglitskaya</surname><given-names>Ya. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Свистунова</surname><given-names>Н. Ю.</given-names></name><name name-style="western" xml:lang="en"><surname>Svistunova</surname><given-names>N. Yu.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Карлов</surname><given-names>Г. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Karlov</surname><given-names>G. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Дивашук</surname><given-names>М. Г.</given-names></name><name name-style="western" xml:lang="en"><surname>Divashuk</surname><given-names>M. G.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Москва</p></bio><bio xml:lang="en"><p>Moscow</p></bio><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Всероссийский научно-исследовательский институт сельскохозяйственной биотехнологии<country>Россия</country></aff><aff xml:lang="en">All-Russia Research Institute of Agricultural Biotechnology<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2026</year></pub-date><pub-date pub-type="epub"><day>06</day><month>04</month><year>2026</year></pub-date><volume>30</volume><issue>2</issue><fpage>321</fpage><lpage>329</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Ульянов Д.С., Ульянова А.А., Кочешкова А.А., Блинков А.О., Архипов А.В., Меглицкая Я.С., Свистунова Н.Ю., Карлов Г.И., Дивашук М.Г., 2026</copyright-statement><copyright-year>2026</copyright-year><copyright-holder xml:lang="ru">Ульянов Д.С., Ульянова А.А., Кочешкова А.А., Блинков А.О., Архипов А.В., Меглицкая Я.С., Свистунова Н.Ю., Карлов Г.И., Дивашук М.Г.</copyright-holder><copyright-holder xml:lang="en">Ulyanov D.S., Ulyanova A.A., Kocheshkova A.A., Blinkov A.O., Arkhipov A.V., Meglitskaya Y.S., Svistunova N.Y., Karlov G.I., Divashuk M.G.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vavilov.elpub.ru/jour/article/view/5049">https://vavilov.elpub.ru/jour/article/view/5049</self-uri><abstract><p>Современные исследования в области агробиотехнологий все чаще опираются на методы автоматизированной фиксации и интерпретации морфофизиологических и спектральных характеристик растений – направление, известное как цифровое фенотипирование. Этот подход направлен на обнаружение устойчивых различий между генотипами, культивируемыми в неидентичных условиях среды. Ранее был предложен StatFaRmer – инструмент с открытым кодом, совершенствующийся в рамках настоящей работы для комплексного анализа временных фенотипических наборов данных, преимущественно ориентированный на изучение сельскохозяйственных культур, таких как соя (Glycine max). Разработанный инструмент реализует автоматизированные процедуры предобработки данных, включая синхронизацию временны’ х меток между образцами и устранение шумовых артефактов и выбросов. Эти функции особенно актуальны для многомесячных экспериментов, связанных с оценкой параметров роста, колебаний площади фотосинтетического аппарата или других биометрических показателей. Поддержка стандартизированных форматов данных (XLSX, CSV) обеспечивает совместимость с распространенными системами фенотипирования, упрощая кроссплатформенную интеграцию. Таким образом, инструмент может поддерживать интеграцию с популярными HTPP-платформами (например, Traitmill, HyperAIxpert, Plant Accelerator), что позволяет использовать данные, полученные из различных источников, в едином аналитическом конвейере. Для экспериментов с соей StatFaRmer предоставляет настраиваемый дисперсионный анализ (ANOVA) с визуализацией диагностических параметров (нормальность распределения, гомогенность дисперсий) и оценкой значимости эффектов между пользовательскими группами. Пример применения включает сравнение параметров роста 20 сортов сои в условиях контролируемого стресса: инструмент автоматически агрегировал данные с неравномерной частотой измерений (от 1 часа до 3  суток), идентифицировал аномалии в динамике удлинения гипокотиля и рассчитал статистическую значимость различий между группами (p &lt; 0.01). Инструмент протестирован на масштабных наборах данных (более 2000 измерений на эксперимент). StatFaRmer реализован в виде веб-приложения на платформе Shiny с пошаговыми инструкциями для установки и запуска в ОС Windows и Linux. Все этапы обработки – от первичных данных до итоговых графиков – документируются, что обеспечивает прозрачность анализа и соответствие требованиям воспроизводимости исследований. Таким образом, StatFaRmer предлагает специализированное решение для статистической верификации гипотез в цифровом фенотипировании сои, сокращая время на подготовку данных и минимизируя риски ошибок при работе с нестационарными временными рядами.</p></abstract><trans-abstract xml:lang="en"><p>Contemporary agrobiotechnology research increasingly relies on automated methods for capturing and interpreting morphophysiological and spectral plant characteristics – a field known as digital phenotyping. This approach aims to identify stable differences between genotypes cultivated under non-identical environmental conditions. We previously introduced StatFaRmer, an open-source tool that we further develop here for comprehensive analysis of temporal phenotypic datasets, with a primary focus on crops such as soybean (Glycine max). The tool implements automated data preprocessing procedures, including synchronization of timestamps across samples and removal of noise artifacts and outliers. These features are particularly relevant for multi-month experiments involving assessments of growth parameters, fluctuations in photosynthetic apparatus area, or other biometric indicators. Support for standardized data formats (XLSX, CSV) ensures compatibility with common phenotyping systems, simplifying cross-platform integration. Thus, the tool can integrate with widely used HTPP platforms (e.g., Traitmill, HyperAIxpert, Plant Accelerator), enabling data from diverse sources to be analyzed within a single pipeline. For soybean experiments, StatFaRmer provides customizable analysis of variance (ANOVA) with visualization of diagnostic parameters (normality of distribution, homogeneity of variances) and evaluation of effect significance between user-defined groups. An example application compares growth parameters across 20 soybean cultivars under controlled stress: the tool automatically aggregated data with uneven measurement frequencies (from 1 hour to 3 days), identified anomalies in hypocotyl elongation dynamics, and computed statistical significance between groups (p &lt; 0.01).The tool has been tested on large-scale datasets (over 2,000 measurements per experiment). StatFaRmer is implemented as a Shiny-based web application, with step-by-step deployment guides for Windows and Linux. All processing stages – from raw data to final plots – are documented to ensure transparency and compliance with research reproducibility standards. Thus, StatFaRmer offers a specialized solution for statistical hypothesis testing in soybean digital phenotyping, reducing data preparation time and minimizing risks of error when handling non-stationary time series.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>высокопроизводительное фенотипирование растений</kwd><kwd>визуализация фенотипических данных</kwd><kwd>анализ временных рядов</kwd><kwd>цифровые платформы фенотипирования</kwd><kwd>генотип-фенотипический анализ</kwd><kwd>статистический анализ фенотипических данных</kwd><kwd>программное обеспечение с открытым исходным кодом</kwd><kwd>автоматизированный анализ данных</kwd></kwd-group><kwd-group xml:lang="en"><kwd>high-throughput plant phenotyping</kwd><kwd>phenotypic data visualization</kwd><kwd>time series analysis</kwd><kwd>digital phenotyping platforms</kwd><kwd>genotype-phenotype analysis</kwd><kwd>statistical analysis of phenotypic data</kwd><kwd>open-source software</kwd><kwd>automated data analysis</kwd></kwd-group><funding-group xml:lang="en"><funding-statement>This study was supported by the Ministry of Science and Higher Education of the Russian Federation (State Assignment FGUM-2025-0010).</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Abebe A.M., Kim Y., Kim J., Kim S.L., Baek J. 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