<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="review-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vavilov</journal-id><journal-title-group><journal-title xml:lang="ru">Вавиловский журнал генетики и селекции</journal-title><trans-title-group xml:lang="en"><trans-title>Vavilov Journal of Genetics and Breeding</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2500-3259</issn><publisher><publisher-name>Institute of Cytology and Genetics of Siberian Branch of the RAS</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18699/vjgb-26-69</article-id><article-id custom-type="elpub" pub-id-type="custom">vavilov-5184</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>МЕДИЦИНСКАЯ ГЕНЕТИКА</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>MEDICAL GENETICS</subject></subj-group></article-categories><title-group><article-title>Мобильные генетические элементы в патогенезе репродуктивных нарушений человека</article-title><trans-title-group xml:lang="en"><trans-title>Mobile genetic elements in the pathogenesis of human reproductive disorders</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1193-5579</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Бабовская</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Babovskaya</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Томск</p></bio><bio xml:lang="en"><p>Tomsk</p></bio><email xlink:type="simple">anastasia.babovskaya@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-1311-7403</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Трифонова</surname><given-names>Е. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Trifonova</surname><given-names>E. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Томск</p></bio><bio xml:lang="en"><p>Tomsk</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5166-331X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Степанов</surname><given-names>В. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Stepanov</surname><given-names>V. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Томск</p></bio><bio xml:lang="en"><p>Tomsk</p></bio><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Научно-исследовательский институт медицинской генетики Томского национального исследовательского медицинского центра<country>Россия</country></aff><aff xml:lang="en">Research Institute of Medical Genetics, Tomsk National Research Medical Center of the Russian Academy of Sciences<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2026</year></pub-date><pub-date pub-type="epub"><day>24</day><month>07</month><year>2026</year></pub-date><volume>30</volume><issue>4</issue><fpage>685</fpage><lpage>695</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Бабовская А.А., Трифонова Е.А., Степанов В.А., 2026</copyright-statement><copyright-year>2026</copyright-year><copyright-holder xml:lang="ru">Бабовская А.А., Трифонова Е.А., Степанов В.А.</copyright-holder><copyright-holder xml:lang="en">Babovskaya A.A., Trifonova E.A., Stepanov V.A.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vavilov.elpub.ru/jour/article/view/5184">https://vavilov.elpub.ru/jour/article/view/5184</self-uri><abstract><p>Мобильные генетические элементы (МГЭ), или транспозоны, представляют собой автономные последовательности ДНК, способные к перемещению и распространению в пределах генома. Долгое время рассматривавшиеся как «эгоистичная» или «мусорная» ДНК в настоящее время МГЭ считаются одними из компонентов, принимающих участие в эволюции генома, регуляции экспрессии генов и патогенезе ряда заболеваний. У человека МГЭ подразделяются на два основных класса: ретротранспозоны (I класс), реплицирующиеся через промежуточную стадию РНК по механизму «копирования–вставки» (copy-and-paste), и ДНК-транспозоны (II класс), перемещающиеся по механизму «вырезания–вставки» (cut-and-paste) без РНК-интермедиата. Ретротранспозоны, по данным проекта «Геном человека», составляют примерно 42 % от доли МГЭ в человеческом геноме. Наиболее многочисленны ретротранспозоны без длинных концевых повторов (non-LTR), среди которых доминируют автономные элементы LINE-1. Несмотря на то что в геноме присутствует около 500 000 копий LINE-1, большинство из них дефектно и лишь малая часть (&lt;100) сохраняет возможность к транспозиции у современного человека. Второй по распространенности группой (около 10.6 %) семейства ретротранспозонов являются короткие диспергированные повторы Alu (SINE-элементы), которые, будучи неавтономными, используют для перемещения и встраивания молекулярный аппарат LINE-1. Активность МГЭ – строго регулируемый процесс в соматических тканях. Эпигенетические механизмы, в частности метилирование ДНК, в норме эффективно подавляют экспрессию и мобильность мобильных генетических элементов. Нарушение этого контроля ассоциировано с широким спектром патологий. Так, гипометилирование и реактивация ретротранспозонов, в особенности LINE-1, продемонстрированы при различных типах рака, нейродегенеративных и аутоиммунных заболеваниях. Цель настоящего обзора – систематический анализ современных представлений о роли мобильных генетических элементов, в частности ретротранспозонов LINE-1, Alu и HERV, в развитии заболеваний репродуктивной системы человека, также включая заболевания, связанные с патологией плаценты, область которых остается недостаточно изученной, несмотря на растущий объем данных.</p></abstract><trans-abstract xml:lang="en"><p>Mobile genetic elements (MGEs), or transposons, are autonomous DNA sequences capable of moving and proliferating within the genome. Long considered “selfish” or “junk” DNA, MGEs are now recognized as key components involved in genome evolution, the regulation of gene expression, and the pathogenesis of various diseases. In humans, MGEs are divided into two main classes: retrotransposons (Class I), which replicate via an RNA intermediate through a “copy-and-paste” mechanism, and DNA transposons (Class II), which move via a “cut-and-paste” mechanism without an RNA intermediate. According to the Human Genome Project, retrotransposons constitute the majority (approximately 42 %) of the MGE fraction within the human genome. The most abundant are the non-long terminal repeat (non-LTR) retrotransposons, dominated by autonomous LINE-1 elements. Although approximately 500,000 LINE-1 copies are present in the genome, the vast majority are defective, and only a small fraction (&lt;100) retain the capacity for transposition in modern humans. The second most prevalent group (about 10.6 %) within the retrotransposon family is the short interspersed nuclear elements (SINEs), specifically Alu elements, which are non-autonomous and hijack the LINE-1 molecular machinery for their mobilization and integration. MGE activity is a tightly regulated process in somatic tissues. Epigenetic mechanisms, particularly DNA methylation, normally effectively suppress MGE expression and mobility. Disruption of this control is associated with a wide range of pathologies. For instance, hypomethylation and reactivation of retrotransposons, notably LINE-1, have been demonstrated in various cancers, as well as in neurodegenerative and autoimmune diseases. The aim of this review is to provide a systematic analysis of the current understanding of the role of mobile genetic elements, particularly LINE-1, Alu, and HERV retrotransposons, in the development of human reproductive system disorders. This also includes diseases associated with placental pathology, an area that remains insufficiently studied to date, despite a growing body of data.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>мобильные элементы генома</kwd><kwd>транспозоны</kwd><kwd>репродукция</kwd><kwd>плацента</kwd><kwd>заболевания человека</kwd></kwd-group><kwd-group xml:lang="en"><kwd>mobile genetic elements</kwd><kwd>transposons</kwd><kwd>reproduction</kwd><kwd>placenta</kwd><kwd>human diseases</kwd></kwd-group><funding-group xml:lang="en"><funding-statement>This research was funded by a state grant (Basic Scientific Research No. 122020200083-8).</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Blaise S., de Parseval N., Bénit L., Heidmann T. Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci USA. 2003;100(22):13013-13018. doi 10.1073/pnas.2132646100</mixed-citation><mixed-citation xml:lang="en">Blaise S., de Parseval N., Bénit L., Heidmann T. Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci USA. 2003;100(22):13013-13018. doi 10.1073/pnas.2132646100</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Bourque G., Burns K.H., Gehring M., Gorbunova V., Seluanov A., Hammell M., Imbeault M., Izsvák Z., Levin H.L., Macfarlan T.S., Mager D.L., Feschotte C. Ten things you should know about transposable elements. Genome Biol. 2018;19(1):199. doi 10.1186/s13059-018-1577-z</mixed-citation><mixed-citation xml:lang="en">Bourque G., Burns K.H., Gehring M., Gorbunova V., Seluanov A., Hammell M., Imbeault M., Izsvák Z., Levin H.L., Macfarlan T.S., Mager D.L., Feschotte C. Ten things you should know about transposable elements. Genome Biol. 2018;19(1):199. doi 10.1186/s13059-018-1577-z</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Brouha B., Schustak J., Badge R.M., Lutz-Prigge S., Farley A.H., Moran J.V., Kazazian H.H. Jr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci USA. 2003; 100(9):5280-5285. doi 10.1073/pnas.0831042100</mixed-citation><mixed-citation xml:lang="en">Brouha B., Schustak J., Badge R.M., Lutz-Prigge S., Farley A.H., Moran J.V., Kazazian H.H. Jr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci USA. 2003; 100(9):5280-5285. doi 10.1073/pnas.0831042100</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Callinan P.A., Batzer M.A. Retrotransposable elements and human disease. Genome Dyn. 2006;1:104-115. doi 10.1159/000092503</mixed-citation><mixed-citation xml:lang="en">Callinan P.A., Batzer M.A. Retrotransposable elements and human disease. Genome Dyn. 2006;1:104-115. doi 10.1159/000092503</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Chang S., Wang L., Guan Y., Shangguan S., Du Q., Wang Y., Zhang T., Zhang Y. Long interspersed nucleotide element-1 hypomethylation in folate-deficient mouse embryonic stem cells. J Cell Biochem. 2013;114(7):1549-1558. doi 10.1002/jcb.24496</mixed-citation><mixed-citation xml:lang="en">Chang S., Wang L., Guan Y., Shangguan S., Du Q., Wang Y., Zhang T., Zhang Y. Long interspersed nucleotide element-1 hypomethylation in folate-deficient mouse embryonic stem cells. J Cell Biochem. 2013;114(7):1549-1558. doi 10.1002/jcb.24496</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Chen X., Pacis A., Aracena K.A., Gona S., Kwan T., Groza C., Lin Y.L., Sindeaux R., Yotova V., Pramatarova A., Simon M.-M., Pastinen T., Barreiro L.B., Bourque G. Transposable elements are associated with the variable response to influenza infection. Cell Genomics. 2023; 3(5):100292. doi 10.1016/j.xgen.2023.100292</mixed-citation><mixed-citation xml:lang="en">Chen X., Pacis A., Aracena K.A., Gona S., Kwan T., Groza C., Lin Y.L., Sindeaux R., Yotova V., Pramatarova A., Simon M.-M., Pastinen T., Barreiro L.B., Bourque G. Transposable elements are associated with the variable response to influenza infection. Cell Genomics. 2023; 3(5):100292. doi 10.1016/j.xgen.2023.100292</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Chénais B. Transposable elements in cancer and other human diseases. Curr Cancer Drug Targets. 2015;15(3):227-242. doi 10.2174/1568009615666150317122506</mixed-citation><mixed-citation xml:lang="en">Chénais B. Transposable elements in cancer and other human diseases. Curr Cancer Drug Targets. 2015;15(3):227-242. doi 10.2174/1568009615666150317122506</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Chénais B., Caruso A., Hiard S., Casse N. The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments. Gene. 2012;509(1):7-15. doi 10.1016/j.gene.2012.07.042</mixed-citation><mixed-citation xml:lang="en">Chénais B., Caruso A., Hiard S., Casse N. The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments. Gene. 2012;509(1):7-15. doi 10.1016/j.gene.2012.07.042</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Chow J.C., Ciaudo C., Fazzari M.J., Mise N., Servant N., Glass J.L., Attreed M., Avner P., Wutz A., Barillot E., Greally J.M., Voinnet O., Heard E. LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell. 2010;141(6):956-969. doi 10.1016/j.cell.2010.04.042</mixed-citation><mixed-citation xml:lang="en">Chow J.C., Ciaudo C., Fazzari M.J., Mise N., Servant N., Glass J.L., Attreed M., Avner P., Wutz A., Barillot E., Greally J.M., Voinnet O., Heard E. LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell. 2010;141(6):956-969. doi 10.1016/j.cell.2010.04.042</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Crow M.K. Type I interferon in the pathogenesis of lupus. J Immunol. 2014;192(12):5459-5468. doi 10.4049/jimmunol.1002795</mixed-citation><mixed-citation xml:lang="en">Crow M.K. Type I interferon in the pathogenesis of lupus. J Immunol. 2014;192(12):5459-5468. doi 10.4049/jimmunol.1002795</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Curty G., Menezes A.N., Brant A.C., de Mulder Rougvie M., Moreira M.Â.M., Soares M.A. Expression of retroelements in cervical cancer and their interplay with HPV infection and host gene expression. Cancers (Basel). 2021;13(14):3513. doi 10.3390/cancers13143513</mixed-citation><mixed-citation xml:lang="en">Curty G., Menezes A.N., Brant A.C., de Mulder Rougvie M., Moreira M.Â.M., Soares M.A. Expression of retroelements in cervical cancer and their interplay with HPV infection and host gene expression. Cancers (Basel). 2021;13(14):3513. doi 10.3390/cancers13143513</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">de la Morena-Barrio B., Stephens J., de la Morena-Barrio M.E., Stefanucci L., Padilla J., Miñano A., Gleadall N., … Vicente V., Ouwehand W.H., Corral J., Sanchis-Juan A.; NIHR Bio-Resource. Long-read sequencing identifies the first retrotransposon insertion and resolves structural variants causing antithrombin deficiency. Thromb Haemost. 2022;122(8):1369-1378. doi 10.1055/s-0042-1749345</mixed-citation><mixed-citation xml:lang="en">de la Morena-Barrio B., Stephens J., de la Morena-Barrio M.E., Stefanucci L., Padilla J., Miñano A., Gleadall N., … Vicente V., Ouwehand W.H., Corral J., Sanchis-Juan A.; NIHR Bio-Resource. Long-read sequencing identifies the first retrotransposon insertion and resolves structural variants causing antithrombin deficiency. Thromb Haemost. 2022;122(8):1369-1378. doi 10.1055/s-0042-1749345</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Demeneva V.V., Tolmacheva E.N., Nikitina T.V., Sazhenova E.A., Yuriev S.Y., Makhmutkhodzhaev A.S., Zuev A.S., Filatova S.A., Dmitriev A.E., Darkova Y.A., Nazarenko L.P., Lebedev I.N., Vasilyev S.A. Expression of the NUP153 and YWHAB genes from their canonical promoters and alternative promoters of the LINE-1 retrotransposon in the placenta of the first trimester of pregnancy. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov J Genet Breed. 2023;27(1):63-71. doi 10.18699/VJGB-23-09</mixed-citation><mixed-citation xml:lang="en">Demeneva V.V., Tolmacheva E.N., Nikitina T.V., Sazhenova E.A., Yuriev S.Y., Makhmutkhodzhaev A.S., Zuev A.S., Filatova S.A., Dmitriev A.E., Darkova Y.A., Nazarenko L.P., Lebedev I.N., Vasilyev S.A. Expression of the NUP153 and YWHAB genes from their canonical promoters and alternative promoters of the LINE-1 retrotransposon in the placenta of the first trimester of pregnancy. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov J Genet Breed. 2023;27(1):63-71. doi 10.18699/VJGB-23-09</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Demeneva V.V., Tolmacheva E.N., Filatova S.A., Zuev A.S., Ushakova A.S., Vasilyeva O.Yu., Sazhenova E.A., Nikitina T.V., Vasiliev S.A. The level of methylation of LINE-1 retrotransposon in chorionic villi in embryos from families with sporadic and recurrent miscarriage. Med Genet. 2024;23(10):50-54. doi 10.25557/2073-7998.2024.10.50-54 (in Russian)</mixed-citation><mixed-citation xml:lang="en">Demeneva V.V., Tolmacheva E.N., Filatova S.A., Zuev A.S., Ushakova A.S., Vasilyeva O.Yu., Sazhenova E.A., Nikitina T.V., Vasiliev S.A. The level of methylation of LINE-1 retrotransposon in chorionic villi in embryos from families with sporadic and recurrent miscarriage. Med Genet. 2024;23(10):50-54. doi 10.25557/2073-7998.2024.10.50-54 (in Russian)</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Di Giacomo M., Comazzetto S., Saini H., De Fazio S., Carrieri C., Morgan M., Vasiliauskaite L., Benes V., Enright A.J., O’Carroll D. Multiple epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesis. Mol Cell. 2013;50(4):601-608. doi 10.1016/j.molcel.2013.04.026</mixed-citation><mixed-citation xml:lang="en">Di Giacomo M., Comazzetto S., Saini H., De Fazio S., Carrieri C., Morgan M., Vasiliauskaite L., Benes V., Enright A.J., O’Carroll D. Multiple epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesis. Mol Cell. 2013;50(4):601-608. doi 10.1016/j.molcel.2013.04.026</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Entringer S., Buss C., Swanson J.M., Cooper D.M., Wing D.A., Waffarn F., Wadhwa P.D. Fetal programming of body composition, obesity, and metabolic function: the role of intrauterine stress and stress biology. J Nutr Metab. 2012;2012:632548. doi 10.1155/2012/632548</mixed-citation><mixed-citation xml:lang="en">Entringer S., Buss C., Swanson J.M., Cooper D.M., Wing D.A., Waffarn F., Wadhwa P.D. Fetal programming of body composition, obesity, and metabolic function: the role of intrauterine stress and stress biology. J Nutr Metab. 2012;2012:632548. doi 10.1155/2012/632548</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Figueiredo J.C., Grau M.V., Wallace K., Levine A.J., Shen L., Hamdan R., Chen X., Bresalier R.S., McKeown-Eyssen G., Haile R.W., Baron J.A., Issa J.P. Global DNA hypomethylation (LINE-1) in the normal colon and lifestyle characteristics and dietary and genetic factors. Cancer Epidemiol Biomarkers Prev. 2009;18(4):1041-1049. doi 10.1158/1055-9965.EPI-08-0926</mixed-citation><mixed-citation xml:lang="en">Figueiredo J.C., Grau M.V., Wallace K., Levine A.J., Shen L., Hamdan R., Chen X., Bresalier R.S., McKeown-Eyssen G., Haile R.W., Baron J.A., Issa J.P. Global DNA hypomethylation (LINE-1) in the normal colon and lifestyle characteristics and dietary and genetic factors. Cancer Epidemiol Biomarkers Prev. 2009;18(4):1041-1049. doi 10.1158/1055-9965.EPI-08-0926</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Fu J., Qin T., Li C., Zhu J., Ding Y., Zhou M., Yang Q., Liu X., Zhou J., Chen F. Research progress of LINE-1 in the diagnosis, prognosis, and treatment of gynecologic tumors. Front Oncol. 2023;13:1201568. doi 10.3389/fonc.2023.1201568</mixed-citation><mixed-citation xml:lang="en">Fu J., Qin T., Li C., Zhu J., Ding Y., Zhou M., Yang Q., Liu X., Zhou J., Chen F. Research progress of LINE-1 in the diagnosis, prognosis, and treatment of gynecologic tumors. Front Oncol. 2023;13:1201568. doi 10.3389/fonc.2023.1201568</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Garcia-Perez J.L., Widmann T.J., Adams I.R. The impact of transposable elements on mammalian development. Development. 2016; 143(22):4101-4114. doi 10.1242/dev.132639</mixed-citation><mixed-citation xml:lang="en">Garcia-Perez J.L., Widmann T.J., Adams I.R. The impact of transposable elements on mammalian development. Development. 2016; 143(22):4101-4114. doi 10.1242/dev.132639</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Gardner E.J., Lam V.K., Harris D.N., Chuang N.T., Scott E.C., Pittard W.S., Mills R.E; 1000 Genomes Project Consortium; Devine S.E. The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology. Genome Res. 2017;27(11):1916-1929. doi 10.1101/gr.218032.116</mixed-citation><mixed-citation xml:lang="en">Gardner E.J., Lam V.K., Harris D.N., Chuang N.T., Scott E.C., Pittard W.S., Mills R.E; 1000 Genomes Project Consortium; Devine S.E. The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology. Genome Res. 2017;27(11):1916-1929. doi 10.1101/gr.218032.116</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Gilbert N., Lutz-Prigge S., Moran J.V. Genomic deletions created upon LINE-1 retrotransposition. Cell. 2002;110(3):315-325. doi 10.1016/S0092-8674(02)00828-0</mixed-citation><mixed-citation xml:lang="en">Gilbert N., Lutz-Prigge S., Moran J.V. Genomic deletions created upon LINE-1 retrotransposition. Cell. 2002;110(3):315-325. doi 10.1016/S0092-8674(02)00828-0</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Goodier J.L. Restricting retrotransposons: a review. Mob DNA. 2016; 7:16. doi 10.1186/s13100-016-0070-z</mixed-citation><mixed-citation xml:lang="en">Goodier J.L. Restricting retrotransposons: a review. Mob DNA. 2016; 7:16. doi 10.1186/s13100-016-0070-z</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Grow E.J., Flynn R.A., Chavez S.L., Bayless N.L., Wossidlo M., Wesche D.J., Martin L., Ware C.B., Blish C.A., Chang H.Y., Pera R.A., Wysocka J. Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells. Nature. 2015; 522(7555):221-225. doi 10.1038/nature14308</mixed-citation><mixed-citation xml:lang="en">Grow E.J., Flynn R.A., Chavez S.L., Bayless N.L., Wossidlo M., Wesche D.J., Martin L., Ware C.B., Blish C.A., Chang H.Y., Pera R.A., Wysocka J. Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells. Nature. 2015; 522(7555):221-225. doi 10.1038/nature14308</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Hancks D.C., Kazazian H.H. Jr. Roles for retrotransposon insertions in human disease. Mob DNA. 2016;7:9. doi 10.1186/s13100-016-0065-9</mixed-citation><mixed-citation xml:lang="en">Hancks D.C., Kazazian H.H. Jr. Roles for retrotransposon insertions in human disease. Mob DNA. 2016;7:9. doi 10.1186/s13100-016-0065-9</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">He X.J., Ecker J.R. Non-CG methylation in the human genome. Annu Rev Genomics Hum Genet. 2014;16:55-77. doi 10.1146/annurev-genom-090413-025437</mixed-citation><mixed-citation xml:lang="en">He X.J., Ecker J.R. Non-CG methylation in the human genome. Annu Rev Genomics Hum Genet. 2014;16:55-77. doi 10.1146/annurev-genom-090413-025437</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Howard G., Eiges R., Gaudet F., Jaenisch R., Eden A. Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice. Oncogene. 2008;27(3):404-408. doi 10.1038/sj.onc.1210631</mixed-citation><mixed-citation xml:lang="en">Howard G., Eiges R., Gaudet F., Jaenisch R., Eden A. Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice. Oncogene. 2008;27(3):404-408. doi 10.1038/sj.onc.1210631</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Hueso M., Cruzado J.M., Torras J., Navarro E. ALUminating the path of atherosclerosis progression: chaos theory suggests a role for alu repeats in the development of atherosclerotic vascular disease. Int J Mol Sci. 2018;19(6):1734. doi 10.3390/ijms19061734</mixed-citation><mixed-citation xml:lang="en">Hueso M., Cruzado J.M., Torras J., Navarro E. ALUminating the path of atherosclerosis progression: chaos theory suggests a role for alu repeats in the development of atherosclerotic vascular disease. Int J Mol Sci. 2018;19(6):1734. doi 10.3390/ijms19061734</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Jachowicz J.W., Bing X., Pontabry J., Bošković A., Rando O.J., Torres-Padilla M.E. LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo. Nat Genet. 2017;49(10):1502-1510. doi 10.1038/ng.3945</mixed-citation><mixed-citation xml:lang="en">Jachowicz J.W., Bing X., Pontabry J., Bošković A., Rando O.J., Torres-Padilla M.E. LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo. Nat Genet. 2017;49(10):1502-1510. doi 10.1038/ng.3945</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Jenkins T.G., Aston K.I., Pflueger C., Cairns B.R., Carrell D.T. Age-associated sperm DNA methylation alterations: possible implications in offspring disease susceptibility. PLoS Genet. 2014;10(7):e1004458. doi 10.1371/journal.pgen.1004458</mixed-citation><mixed-citation xml:lang="en">Jenkins T.G., Aston K.I., Pflueger C., Cairns B.R., Carrell D.T. Age-associated sperm DNA methylation alterations: possible implications in offspring disease susceptibility. PLoS Genet. 2014;10(7):e1004458. doi 10.1371/journal.pgen.1004458</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">Joubert B.R., den Dekker H.T., Felix J.F., Bohlin J., Ligthart S., Beckett E., Tiemeier H., … Peddada S.D., Jaddoe V.W., Nystad W., Duijts L., London S.J. Maternal plasma folate impacts differential DNA methylation in an epigenome-wide meta-analysis of newborns. Nat Commun. 2016;7:10577. doi 10.1038/ncomms10577</mixed-citation><mixed-citation xml:lang="en">Joubert B.R., den Dekker H.T., Felix J.F., Bohlin J., Ligthart S., Beckett E., Tiemeier H., … Peddada S.D., Jaddoe V.W., Nystad W., Duijts L., London S.J. Maternal plasma folate impacts differential DNA methylation in an epigenome-wide meta-analysis of newborns. Nat Commun. 2016;7:10577. doi 10.1038/ncomms10577</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Kajihara T., Brosens J.J., Ishihara O. The role of FOXO1 in the decidual transformation of the endometrium and early pregnancy. Med Mol Morphol. 2013;46(2):61-68. doi 10.1007/s00795-013-0018-z</mixed-citation><mixed-citation xml:lang="en">Kajihara T., Brosens J.J., Ishihara O. The role of FOXO1 in the decidual transformation of the endometrium and early pregnancy. Med Mol Morphol. 2013;46(2):61-68. doi 10.1007/s00795-013-0018-z</mixed-citation></citation-alternatives></ref><ref id="cit32"><label>32</label><citation-alternatives><mixed-citation xml:lang="ru">Khitrinskaya I.Y., Stepanov V.A. Puzyrev V.P. Alu repeats in the human genome. Mol Biol. 2003;37(3):325-333. doi 10.1023/A:1024218806634</mixed-citation><mixed-citation xml:lang="en">Khitrinskaya I.Y., Stepanov V.A. Puzyrev V.P. Alu repeats in the human genome. Mol Biol. 2003;37(3):325-333. doi 10.1023/A:1024218806634</mixed-citation></citation-alternatives></ref><ref id="cit33"><label>33</label><citation-alternatives><mixed-citation xml:lang="ru">Khitrinskaya I.Y., Kharkov V.N., Voevoda M.I., Stepanov V.A. Genetic diversity and relationships of populations of northern Eurasia by polymorphic Alu insertions. Mol Biol. 2014;48(1):58-68. doi 10.1134/S0026893314010051</mixed-citation><mixed-citation xml:lang="en">Khitrinskaya I.Y., Kharkov V.N., Voevoda M.I., Stepanov V.A. Genetic diversity and relationships of populations of northern Eurasia by polymorphic Alu insertions. Mol Biol. 2014;48(1):58-68. doi 10.1134/S0026893314010051</mixed-citation></citation-alternatives></ref><ref id="cit34"><label>34</label><citation-alternatives><mixed-citation xml:lang="ru">Kin K., Maziarz J., Wagner G.P. Immunohistological study of the endometrial stromal fibroblasts in the opossum, Monodelphis domestica: evidence for homology with eutherian stromal fibroblasts. Biol Reprod. 2014;90(5):111. doi 10.1095/biolreprod.113.115139</mixed-citation><mixed-citation xml:lang="en">Kin K., Maziarz J., Wagner G.P. Immunohistological study of the endometrial stromal fibroblasts in the opossum, Monodelphis domestica: evidence for homology with eutherian stromal fibroblasts. Biol Reprod. 2014;90(5):111. doi 10.1095/biolreprod.113.115139</mixed-citation></citation-alternatives></ref><ref id="cit35"><label>35</label><citation-alternatives><mixed-citation xml:lang="ru">Kong Y., Rose C.M., Cass A.A., Williams A.G., Darwish M., Lianoglou S., Haverty P.M., … Mellman I., Bourgon R., Greally J., Jhunjhunwala S., Chen-Harris H. Transposable element expression in tumors is associated with immune infiltration and increased antigenicity. Nat Commun. 2019;10(1):5228. doi 10.1038/s41467-019-13035-2</mixed-citation><mixed-citation xml:lang="en">Kong Y., Rose C.M., Cass A.A., Williams A.G., Darwish M., Lianoglou S., Haverty P.M., … Mellman I., Bourgon R., Greally J., Jhunjhunwala S., Chen-Harris H. Transposable element expression in tumors is associated with immune infiltration and increased antigenicity. Nat Commun. 2019;10(1):5228. doi 10.1038/s41467-019-13035-2</mixed-citation></citation-alternatives></ref><ref id="cit36"><label>36</label><citation-alternatives><mixed-citation xml:lang="ru">Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., Devon K., … Shizuya H., Choi S., Chen Y.J., Szustakowki J.; International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature. 2001; 409(6822):860-921. doi 10.1038/35057062</mixed-citation><mixed-citation xml:lang="en">Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., Devon K., … Shizuya H., Choi S., Chen Y.J., Szustakowki J.; International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature. 2001; 409(6822):860-921. doi 10.1038/35057062</mixed-citation></citation-alternatives></ref><ref id="cit37"><label>37</label><citation-alternatives><mixed-citation xml:lang="ru">Lavialle C., Cornelis G., Dupressoir A., Esnault C., Heidmann O., Vernochet C., Heidmann T. Paleovirology of ‘syncytins’, retroviral env genes exapted for a role in placentation. Philos Trans R Soc Lond B Biol Sci. 2013;368(1626):20120507. doi 10.1098/rstb.2012.0507</mixed-citation><mixed-citation xml:lang="en">Lavialle C., Cornelis G., Dupressoir A., Esnault C., Heidmann O., Vernochet C., Heidmann T. Paleovirology of ‘syncytins’, retroviral env genes exapted for a role in placentation. Philos Trans R Soc Lond B Biol Sci. 2013;368(1626):20120507. doi 10.1098/rstb.2012.0507</mixed-citation></citation-alternatives></ref><ref id="cit38"><label>38</label><citation-alternatives><mixed-citation xml:lang="ru">Li B., Chang S., Liu C., Zhang M., Zhang L., Liang L., Li R., Wang X., Qin C., Zhang T., Niu B., Wang L. Low maternal dietary folate alters retrotransposon by methylation regulation in Intrauterine Growth Retardation (IUGR) fetuses in a mouse model. Med Sci Monit. 2019;25:3354-3365. doi 10.12659/MSM.914292</mixed-citation><mixed-citation xml:lang="en">Li B., Chang S., Liu C., Zhang M., Zhang L., Liang L., Li R., Wang X., Qin C., Zhang T., Niu B., Wang L. Low maternal dietary folate alters retrotransposon by methylation regulation in Intrauterine Growth Retardation (IUGR) fetuses in a mouse model. Med Sci Monit. 2019;25:3354-3365. doi 10.12659/MSM.914292</mixed-citation></citation-alternatives></ref><ref id="cit39"><label>39</label><citation-alternatives><mixed-citation xml:lang="ru">Lou C., Goodier J.L., Qiang R. A potential new mechanism for pregnancy loss: considering the role of LINE-1 retrotransposons in early spontaneous miscarriage. Reprod Biol Endocrinol. 2020;18(1):6. doi 10.1186/s12958-020-0564-x</mixed-citation><mixed-citation xml:lang="en">Lou C., Goodier J.L., Qiang R. A potential new mechanism for pregnancy loss: considering the role of LINE-1 retrotransposons in early spontaneous miscarriage. Reprod Biol Endocrinol. 2020;18(1):6. doi 10.1186/s12958-020-0564-x</mixed-citation></citation-alternatives></ref><ref id="cit40"><label>40</label><citation-alternatives><mixed-citation xml:lang="ru">Lynch V.J., Nnamani M.C., Kapusta A., Brayer K., Plaza S.L., Mazur E.C., Emera D., … Young S.L., Lieb J.D., DeMayo F.J., Feschotte C., Wagner G.P. Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Rep. 2015;10(4):551-561. doi 10.1016/j.celrep.2014.12.052</mixed-citation><mixed-citation xml:lang="en">Lynch V.J., Nnamani M.C., Kapusta A., Brayer K., Plaza S.L., Mazur E.C., Emera D., … Young S.L., Lieb J.D., DeMayo F.J., Feschotte C., Wagner G.P. Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Rep. 2015;10(4):551-561. doi 10.1016/j.celrep.2014.12.052</mixed-citation></citation-alternatives></ref><ref id="cit41"><label>41</label><citation-alternatives><mixed-citation xml:lang="ru">Macfarlan T.S., Gifford W.D., Driscoll S., Lettieri K., Rowe H.M., Bonanomi D., Firth A., Singer O., Trono D., Pfaff S.L. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature. 2012;487(7405):57-63. doi 10.1038/nature11244</mixed-citation><mixed-citation xml:lang="en">Macfarlan T.S., Gifford W.D., Driscoll S., Lettieri K., Rowe H.M., Bonanomi D., Firth A., Singer O., Trono D., Pfaff S.L. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature. 2012;487(7405):57-63. doi 10.1038/nature11244</mixed-citation></citation-alternatives></ref><ref id="cit42"><label>42</label><citation-alternatives><mixed-citation xml:lang="ru">Macia A., Widmann T.J., Heras S.R., Ayllon V., Sanchez L., Benkaddour-Boumzaouad M., Muñoz-Lopez M., … Menendez P., Ng P., Muotri A.R., Goodier J.L., Garcia-Perez J.L. Engineered LINE-1 retrotransposition in nondividing human neurons. Genome Res. 2017;27(3):335-348. doi 10.1101/gr.206805.116</mixed-citation><mixed-citation xml:lang="en">Macia A., Widmann T.J., Heras S.R., Ayllon V., Sanchez L., Benkaddour-Boumzaouad M., Muñoz-Lopez M., … Menendez P., Ng P., Muotri A.R., Goodier J.L., Garcia-Perez J.L. Engineered LINE-1 retrotransposition in nondividing human neurons. Genome Res. 2017;27(3):335-348. doi 10.1101/gr.206805.116</mixed-citation></citation-alternatives></ref><ref id="cit43"><label>43</label><citation-alternatives><mixed-citation xml:lang="ru">McKerrow W., Wang X., Mendez-Dorantes C., Mita P., Cao S., Grivainis M., Ding L., LaCava J., Burns K.H., Boeke J.D., Fenyö D. LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint. Proc Natl Acad Sci USA. 2022;119(8):e2115999119. doi 10.1073/pnas.2115999119</mixed-citation><mixed-citation xml:lang="en">McKerrow W., Wang X., Mendez-Dorantes C., Mita P., Cao S., Grivainis M., Ding L., LaCava J., Burns K.H., Boeke J.D., Fenyö D. LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint. Proc Natl Acad Sci USA. 2022;119(8):e2115999119. doi 10.1073/pnas.2115999119</mixed-citation></citation-alternatives></ref><ref id="cit44"><label>44</label><citation-alternatives><mixed-citation xml:lang="ru">Mess A., Carter A.M. Evolutionary transformations of fetal membrane characters in Eutheria with special reference to Afrotheria. J Exp Zoolog B Mol Dev Evol. 2006;306(6):480-494. doi 10.1002/jez.b.21079</mixed-citation><mixed-citation xml:lang="en">Mess A., Carter A.M. Evolutionary transformations of fetal membrane characters in Eutheria with special reference to Afrotheria. J Exp Zoolog B Mol Dev Evol. 2006;306(6):480-494. doi 10.1002/jez.b.21079</mixed-citation></citation-alternatives></ref><ref id="cit45"><label>45</label><citation-alternatives><mixed-citation xml:lang="ru">Mi S., Lee X., Li X., Veldman G.M., Finnerty H., Racie L., LaVallie E., Tang X.Y., Edouard P., Howes S., Keith J.C., McCoy J.M. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature. 2000;403(6771):785-789. doi 10.1038/35001608</mixed-citation><mixed-citation xml:lang="en">Mi S., Lee X., Li X., Veldman G.M., Finnerty H., Racie L., LaVallie E., Tang X.Y., Edouard P., Howes S., Keith J.C., McCoy J.M. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature. 2000;403(6771):785-789. doi 10.1038/35001608</mixed-citation></citation-alternatives></ref><ref id="cit46"><label>46</label><citation-alternatives><mixed-citation xml:lang="ru">Mika K., Lynch V.J. Transposable elements continuously remodel the regulatory landscape, transcriptome, and function of decidual stromal cells. Genome Biol Evol. 2022;14(12):evac164. doi 10.1093/gbe/evac164</mixed-citation><mixed-citation xml:lang="en">Mika K., Lynch V.J. Transposable elements continuously remodel the regulatory landscape, transcriptome, and function of decidual stromal cells. Genome Biol Evol. 2022;14(12):evac164. doi 10.1093/gbe/evac164</mixed-citation></citation-alternatives></ref><ref id="cit47"><label>47</label><citation-alternatives><mixed-citation xml:lang="ru">Mika K., Marinić M., Chigurupati S., Lynch V.J. Evolutionary transcriptomics implicates new genes and pathways in human pregnancy and adverse pregnancy outcomes. Elife. 2021;10:e69584. doi 10.7554/eLife.69584</mixed-citation><mixed-citation xml:lang="en">Mika K., Marinić M., Chigurupati S., Lynch V.J. Evolutionary transcriptomics implicates new genes and pathways in human pregnancy and adverse pregnancy outcomes. Elife. 2021;10:e69584. doi 10.7554/eLife.69584</mixed-citation></citation-alternatives></ref><ref id="cit48"><label>48</label><citation-alternatives><mixed-citation xml:lang="ru">Miki Y., Nishisho I., Horii A., Miyoshi Y., Utsunomiya J., Kinzler K.W., Vogelstein B., Nakamura Y. Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer. Cancer Res. 1992;52(3):643-645</mixed-citation><mixed-citation xml:lang="en">Miki Y., Nishisho I., Horii A., Miyoshi Y., Utsunomiya J., Kinzler K.W., Vogelstein B., Nakamura Y. Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer. Cancer Res. 1992;52(3):643-645</mixed-citation></citation-alternatives></ref><ref id="cit49"><label>49</label><citation-alternatives><mixed-citation xml:lang="ru">Molaro A., Hodges E., Fang F., Song Q., McCombie W.R., Hannon G.J., Smith A.D. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell. 2011;146(6):1029-1041. doi 10.1016/j.cell.2011.08.016</mixed-citation><mixed-citation xml:lang="en">Molaro A., Hodges E., Fang F., Song Q., McCombie W.R., Hannon G.J., Smith A.D. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell. 2011;146(6):1029-1041. doi 10.1016/j.cell.2011.08.016</mixed-citation></citation-alternatives></ref><ref id="cit50"><label>50</label><citation-alternatives><mixed-citation xml:lang="ru">Nguyen T.H.M., Carreira P.E., Sanchez-Luque F.J., Schauer S.N., Fagg A.C., Richardson S.R., Davies C.M., … Perrin L.C., Hooper J.D., Ewing A.D., Upton K.R., Faulkner G.J. L1 retrotransposon heterogeneity in ovarian tumor cell evolution. Cell Rep. 2018;23(13): 3730-3740. doi 10.1016/j.celrep.2018.05.090</mixed-citation><mixed-citation xml:lang="en">Nguyen T.H.M., Carreira P.E., Sanchez-Luque F.J., Schauer S.N., Fagg A.C., Richardson S.R., Davies C.M., … Perrin L.C., Hooper J.D., Ewing A.D., Upton K.R., Faulkner G.J. L1 retrotransposon heterogeneity in ovarian tumor cell evolution. Cell Rep. 2018;23(13): 3730-3740. doi 10.1016/j.celrep.2018.05.090</mixed-citation></citation-alternatives></ref><ref id="cit51"><label>51</label><citation-alternatives><mixed-citation xml:lang="ru">Percharde M., Lin C.J., Yin Y., Guan J., Peixoto G.A., Bulut-Karslioglu A., Biechele S., Huang B., Shen X., Ramalho-Santos M. A LINE1-nucleolin partnership regulates early development and esc identity. Cell. 2018;174(2):391-405.e19. doi 10.1016/j.cell.2018.05.043</mixed-citation><mixed-citation xml:lang="en">Percharde M., Lin C.J., Yin Y., Guan J., Peixoto G.A., Bulut-Karslioglu A., Biechele S., Huang B., Shen X., Ramalho-Santos M. A LINE1-nucleolin partnership regulates early development and esc identity. Cell. 2018;174(2):391-405.e19. doi 10.1016/j.cell.2018.05.043</mixed-citation></citation-alternatives></ref><ref id="cit52"><label>52</label><citation-alternatives><mixed-citation xml:lang="ru">Polynnikova A.K., Zinovyeva O.E., Solokha O.A., Misyuryaeva E.V. Hereditary neuropathy with liability to pressure palsies: a case report. Neurology, Neuropsychiatry, Psychosomatics. 2021;13(4):116-122. doi 10.14412/2074-2711-2021-4-116-122 (in Russian)</mixed-citation><mixed-citation xml:lang="en">Polynnikova A.K., Zinovyeva O.E., Solokha O.A., Misyuryaeva E.V. Hereditary neuropathy with liability to pressure palsies: a case report. Neurology, Neuropsychiatry, Psychosomatics. 2021;13(4):116-122. doi 10.14412/2074-2711-2021-4-116-122 (in Russian)</mixed-citation></citation-alternatives></ref><ref id="cit53"><label>53</label><citation-alternatives><mixed-citation xml:lang="ru">Ravel-Godreuil C., Znaidi R., Bonnifet T., Joshi R.L., Fuchs J. Transposable elements as new players in neurodegenerative diseases. FEBS Lett. 2021;595(22):2733-2755. doi 10.1002/1873-3468.14205</mixed-citation><mixed-citation xml:lang="en">Ravel-Godreuil C., Znaidi R., Bonnifet T., Joshi R.L., Fuchs J. Transposable elements as new players in neurodegenerative diseases. FEBS Lett. 2021;595(22):2733-2755. doi 10.1002/1873-3468.14205</mixed-citation></citation-alternatives></ref><ref id="cit54"><label>54</label><citation-alternatives><mixed-citation xml:lang="ru">Roy N., Haq I., Ngo J.C., Bennett D.A., Teich A.F., De Jager P.L., Olah M., Sher F. Elevated expression of the retrotransposon LINE-1 drives Alzheimer’s disease-associated microglial dysfunction. Acta Neuropathol. 2024;148(1):75. doi 10.1007/s00401-024-02835-6</mixed-citation><mixed-citation xml:lang="en">Roy N., Haq I., Ngo J.C., Bennett D.A., Teich A.F., De Jager P.L., Olah M., Sher F. Elevated expression of the retrotransposon LINE-1 drives Alzheimer’s disease-associated microglial dysfunction. Acta Neuropathol. 2024;148(1):75. doi 10.1007/s00401-024-02835-6</mixed-citation></citation-alternatives></ref><ref id="cit55"><label>55</label><citation-alternatives><mixed-citation xml:lang="ru">Sato S., Gillette M., de Santiago P.R., Kuhn E., Burgess M., Doucette K., Feng Y., ... Birrer M.J., Skates S.J., Burns K.H., Carr S.A., Drapkin R. LINE-1 ORF1p as a candidate biomarker in high grade serous ovarian carcinoma. Sci Rep. 2023;13(1):1537. doi 10.1038/s41598-023-28840-5</mixed-citation><mixed-citation xml:lang="en">Sato S., Gillette M., de Santiago P.R., Kuhn E., Burgess M., Doucette K., Feng Y., ... Birrer M.J., Skates S.J., Burns K.H., Carr S.A., Drapkin R. LINE-1 ORF1p as a candidate biomarker in high grade serous ovarian carcinoma. Sci Rep. 2023;13(1):1537. doi 10.1038/s41598-023-28840-5</mixed-citation></citation-alternatives></ref><ref id="cit56"><label>56</label><citation-alternatives><mixed-citation xml:lang="ru">Sen S.K., Han K., Wang J., Lee J., Wang H., Callinan P.A., Dyer M., Cordaux R., Liang P., Batzer M.A. Human genomic deletions mediated by recombination between Alu elements. Am J Hum Genet. 2006;79(1):41-53. doi 10.1086/504600</mixed-citation><mixed-citation xml:lang="en">Sen S.K., Han K., Wang J., Lee J., Wang H., Callinan P.A., Dyer M., Cordaux R., Liang P., Batzer M.A. Human genomic deletions mediated by recombination between Alu elements. Am J Hum Genet. 2006;79(1):41-53. doi 10.1086/504600</mixed-citation></citation-alternatives></ref><ref id="cit57"><label>57</label><citation-alternatives><mixed-citation xml:lang="ru">Slotkin R.K., Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet. 2007;8(4):272-285. doi 10.1038/nrg2072</mixed-citation><mixed-citation xml:lang="en">Slotkin R.K., Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet. 2007;8(4):272-285. doi 10.1038/nrg2072</mixed-citation></citation-alternatives></ref><ref id="cit58"><label>58</label><citation-alternatives><mixed-citation xml:lang="ru">Smith Z.D., Chan M.M., Mikkelsen T.S., Gu H., Gnirke A., Regev A., Meissner A. A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature. 2012;484(7394):339-344. doi 10.1038/nature10960</mixed-citation><mixed-citation xml:lang="en">Smith Z.D., Chan M.M., Mikkelsen T.S., Gu H., Gnirke A., Regev A., Meissner A. A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature. 2012;484(7394):339-344. doi 10.1038/nature10960</mixed-citation></citation-alternatives></ref><ref id="cit59"><label>59</label><citation-alternatives><mixed-citation xml:lang="ru">Taniguchi-Ikeda M., Kobayashi K., Kanagawa M., Yu C.C., Mori K., Oda T., Kuga A., Kurahashi H., Akman H.O., DiMauro S., Kaji R., Yokota T., Takeda S., Toda T. Pathogenic exon-trapping by SVA retrotransposon and rescue in Fukuyama muscular dystrophy. Nature. 2011;478(7367):127-131. doi 10.1038/nature10456</mixed-citation><mixed-citation xml:lang="en">Taniguchi-Ikeda M., Kobayashi K., Kanagawa M., Yu C.C., Mori K., Oda T., Kuga A., Kurahashi H., Akman H.O., DiMauro S., Kaji R., Yokota T., Takeda S., Toda T. Pathogenic exon-trapping by SVA retrotransposon and rescue in Fukuyama muscular dystrophy. Nature. 2011;478(7367):127-131. doi 10.1038/nature10456</mixed-citation></citation-alternatives></ref><ref id="cit60"><label>60</label><citation-alternatives><mixed-citation xml:lang="ru">Tubio J.M.C., Li Y., Ju Y.S., Martincorena I., Cooke S.L., Tojo M., Gundem G., … McDermott U., Campbell P.J.; ICGC Breast Cancer Group; ICGC Bone Cancer Group; ICGC Prostate Cancer Group. Mobile DNA in cancer: Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science. 2014;345(6196):1251343. doi 10.1126/science.1251343</mixed-citation><mixed-citation xml:lang="en">Tubio J.M.C., Li Y., Ju Y.S., Martincorena I., Cooke S.L., Tojo M., Gundem G., … McDermott U., Campbell P.J.; ICGC Breast Cancer Group; ICGC Bone Cancer Group; ICGC Prostate Cancer Group. Mobile DNA in cancer: Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science. 2014;345(6196):1251343. doi 10.1126/science.1251343</mixed-citation></citation-alternatives></ref><ref id="cit61"><label>61</label><citation-alternatives><mixed-citation xml:lang="ru">van den Hurk J.A.J.M., Meij I.C., Seleme M.C., Kano H., Nikopoulos K., Hoefsloot L.H., Sistermans E.A., de Wijs I.J., Mukhopadhyay A., Plomp A.S., de Jong P.T., Kazazian H.H., Cremers F.P. L1 retrotransposition can occur early in human embryonic development. Hum Mol Genet. 2007;16(13):1587-1592. doi 10.1093/hmg/ddm108</mixed-citation><mixed-citation xml:lang="en">van den Hurk J.A.J.M., Meij I.C., Seleme M.C., Kano H., Nikopoulos K., Hoefsloot L.H., Sistermans E.A., de Wijs I.J., Mukhopadhyay A., Plomp A.S., de Jong P.T., Kazazian H.H., Cremers F.P. L1 retrotransposition can occur early in human embryonic development. Hum Mol Genet. 2007;16(13):1587-1592. doi 10.1093/hmg/ddm108</mixed-citation></citation-alternatives></ref><ref id="cit62"><label>62</label><citation-alternatives><mixed-citation xml:lang="ru">Vasiliev S.A., Tolmacheva E.N., Kashevarova A.A., Sazhenova E.A., Lebedev I.N. Methylation status of line-1 retrotransposon in chromosomal mosaicism during the early stages of human embryonic development. Mol Biol. 2015;49(1):144-152. doi 10.1134/S0026893314060193</mixed-citation><mixed-citation xml:lang="en">Vasiliev S.A., Tolmacheva E.N., Kashevarova A.A., Sazhenova E.A., Lebedev I.N. Methylation status of line-1 retrotransposon in chromosomal mosaicism during the early stages of human embryonic development. Mol Biol. 2015;49(1):144-152. doi 10.1134/S0026893314060193</mixed-citation></citation-alternatives></ref><ref id="cit63"><label>63</label><citation-alternatives><mixed-citation xml:lang="ru">Vasilyev S.A., Tolmacheva E.N., Vasilyeva O.Y., Markov A.V., Zhigalina D.I., Zatula L.A., Lee V.A., Serdyukova E.S., Sazhenova E.A., Nikitina T.V., Kashevarova A.A., Lebedev I.N. LINE-1 retrotransposon methylation in chorionic villi of first trimester miscarriages with aneuploidy. J Assist Reprod Genet. 2021;38(1):139-149. doi 10.1007/s10815-020-02003-1</mixed-citation><mixed-citation xml:lang="en">Vasilyev S.A., Tolmacheva E.N., Vasilyeva O.Y., Markov A.V., Zhigalina D.I., Zatula L.A., Lee V.A., Serdyukova E.S., Sazhenova E.A., Nikitina T.V., Kashevarova A.A., Lebedev I.N. LINE-1 retrotransposon methylation in chorionic villi of first trimester miscarriages with aneuploidy. J Assist Reprod Genet. 2021;38(1):139-149. doi 10.1007/s10815-020-02003-1</mixed-citation></citation-alternatives></ref><ref id="cit64"><label>64</label><citation-alternatives><mixed-citation xml:lang="ru">Warren J., Im M., Ballesteros A., Ha C., Moore T., Lambert F., Lucas S., Hinz B., Dveksler G. Activation of latent transforming growth factor-β1, a conserved function for pregnancy-specific beta 1-glycoproteins. Mol Hum Reprod. 2018;24:602-612. doi 10.1093/molehr/gay044</mixed-citation><mixed-citation xml:lang="en">Warren J., Im M., Ballesteros A., Ha C., Moore T., Lambert F., Lucas S., Hinz B., Dveksler G. Activation of latent transforming growth factor-β1, a conserved function for pregnancy-specific beta 1-glycoproteins. Mol Hum Reprod. 2018;24:602-612. doi 10.1093/molehr/gay044</mixed-citation></citation-alternatives></ref><ref id="cit65"><label>65</label><citation-alternatives><mixed-citation xml:lang="ru">Wyrwoll M.J., Gaasbeek C.M., Golubickaite I., Stakaitis R., Oud M.S., Nagirnaja L., Dion C., … Conrad D.F., Almstrup K., Veltman J.A., Tüttelmann F., van der Heijden G.W. The piRNA-pathway factor FKBP6 is essential for spermatogenesis but dispensable for control of meiotic LINE-1 expression in humans. Am J Hum Genet. 2022; 109(10):1850-1866. doi 10.1016/j.ajhg.2022.09.002</mixed-citation><mixed-citation xml:lang="en">Wyrwoll M.J., Gaasbeek C.M., Golubickaite I., Stakaitis R., Oud M.S., Nagirnaja L., Dion C., … Conrad D.F., Almstrup K., Veltman J.A., Tüttelmann F., van der Heijden G.W. The piRNA-pathway factor FKBP6 is essential for spermatogenesis but dispensable for control of meiotic LINE-1 expression in humans. Am J Hum Genet. 2022; 109(10):1850-1866. doi 10.1016/j.ajhg.2022.09.002</mixed-citation></citation-alternatives></ref><ref id="cit66"><label>66</label><citation-alternatives><mixed-citation xml:lang="ru">Yano N., Chong P.F., Kojima K.K., Miyoshi T., Luqman-Fatah A., Kimura Y., Kora K., … Hagiwara M., Kondo T., Kira R., Takita J., Yoshida T. Long-read sequencing identifies an SVA_D retrotransposon insertion deep within the intron of ATP7A as a novel cause of occipital horn syndrome. J Med Genet. 2024;61(10):950-958. doi 10.1136/jmg-2024-110056</mixed-citation><mixed-citation xml:lang="en">Yano N., Chong P.F., Kojima K.K., Miyoshi T., Luqman-Fatah A., Kimura Y., Kora K., … Hagiwara M., Kondo T., Kira R., Takita J., Yoshida T. Long-read sequencing identifies an SVA_D retrotransposon insertion deep within the intron of ATP7A as a novel cause of occipital horn syndrome. J Med Genet. 2024;61(10):950-958. doi 10.1136/jmg-2024-110056</mixed-citation></citation-alternatives></ref><ref id="cit67"><label>67</label><citation-alternatives><mixed-citation xml:lang="ru">Zhang B., Xing X., Li J., Lowdon R.F., Zhou Y., Lin N., Zhang B., Sundaram V., Chiappinelli K.B., Hagemann I.S., Mutch D.G., Goodfellow P.J., Wang T. Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers. BMC Genomics. 2014;15(1):868. doi 10.1186/1471-2164-15-868</mixed-citation><mixed-citation xml:lang="en">Zhang B., Xing X., Li J., Lowdon R.F., Zhou Y., Lin N., Zhang B., Sundaram V., Chiappinelli K.B., Hagemann I.S., Mutch D.G., Goodfellow P.J., Wang T. Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers. BMC Genomics. 2014;15(1):868. doi 10.1186/1471-2164-15-868</mixed-citation></citation-alternatives></ref><ref id="cit68"><label>68</label><citation-alternatives><mixed-citation xml:lang="ru">Zhang W., Huang C., Yao H., Yang S., Jiapaer Z., Song J., Wang X. Retrotransposon: an insight into neurological disorders from perspectives of neurodevelopment and aging. Transl Neurodegener. 2025;14(1):14. doi 10.1186/s40035-025-00471-y</mixed-citation><mixed-citation xml:lang="en">Zhang W., Huang C., Yao H., Yang S., Jiapaer Z., Song J., Wang X. Retrotransposon: an insight into neurological disorders from perspectives of neurodevelopment and aging. Transl Neurodegener. 2025;14(1):14. doi 10.1186/s40035-025-00471-y</mixed-citation></citation-alternatives></ref><ref id="cit69"><label>69</label><citation-alternatives><mixed-citation xml:lang="ru">Zheng K., Wang P.J. Blockade of pachytene piRNA biogenesis reveals a novel requirement for maintaining post-meiotic germline genome integrity. PLoS Genet. 2012;8(11):e1003038. doi 10.1371/journal.pgen.1003038</mixed-citation><mixed-citation xml:lang="en">Zheng K., Wang P.J. Blockade of pachytene piRNA biogenesis reveals a novel requirement for maintaining post-meiotic germline genome integrity. PLoS Genet. 2012;8(11):e1003038. doi 10.1371/journal.pgen.1003038</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
