The role of DNA methylation in the disorders of bone metabolism
https://doi.org/10.18699/VJ19.463
Abstract
About the Authors
B. I. YalaevRussian Federation
Ufa
A. V. Tyurin
Russian Federation
Ufa
R. Y. Mirgalieva
Russian Federation
Ufa
R. I. Khusainova
Russian Federation
Ufa
References
1. Vanyushin B.F. Epigenetics today and tomorrow. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov Journal of Genetics and Breeding. 2013;17(4/2):805-832. (in Russian)
2. Grebennikova T.A., Belaya Z.E., Rozhinskaya L.Y., Mel’nichenko G.A., Dedov I.I. Epigenetic aspects of osteoporosis. Vestnik Rossiyskoy Akademii Meditsinskikh Nauk = Annals of the Russian Academy of Medical Sciences. 2015;70(5):541-548. DOI 10.15690/ vramn.v70.i5.1440. (in Russian)
3. Skryabin N.A., Kashevarova A.A., Denisov E.V., Lebedev I.N. Methods of DNA methylation analysis: potential and limitations of their application in oncology. Sibirskii Onkologicheskii Zhurnal = Siberian Journal of Oncology. 2013;6:64-60. (in Russian)
4. Filina Yu.V., Gabdulkhakova A.G., Arleyevskaya M.I. The methods of analysis of DNA methylation. Biokhimiya = Biochemistry. 2012; 8:15-18. (in Russian)
5. Allis C.D., Jenuwein T., Reinberg D. (Eds.) Epigenetics. New York: Cold Spring Harbor Laboratory Press, 2007. (Russ. ed.: Ellis S.D., Dzhenyuveyn T., Reynberg D. (red.) Epigenetika. Moscow: Tekhnosfera Publ., 2010. (in Russian))
6. Baccarelli A. Techniques for epigenetic analysis. How to apply them to human and epidemiology studies. 2018. Available at https://cdn1.sph.harvard.edu/wp-content/uploads/sites/1291/2012/11/JacksonTutorial.pdf
7. Cheishvili D., Parashar S., Mahmood N., Arakelian A., Kremer R., Goltzman D., Szyf M., Rabbani S.A. Identification of an epigenetic signature of osteoporosis in blood DNA of postmenopausal women. J. Bone Miner. Res. 2018;1-34. DOI 10.1002/jbmr.3527.
8. Cho Y.D., Yoon W.J., Kim W.J., Woo K.M., Baek J.H., Lee G., Ku Y., van Wijnen A.J., Ryoo H.M. Epigenetic modifications and canonical wingless/int-1 class (WNT) signaling enable transdifferentiation of nonosteogenic cells into osteoblasts. J. Biol. Chem. 2014;289(29): 20120-20128. DOI 10.1074/jbc.M114.558064.
9. Colin D., Sanjay K.G., Raymond Y. Analysis of DNA methylation by pyrosequencing. Methods Mol. Biol. 2016;1343:249-264. DOI 10.1007/978-1-4939-2963-4_19.
10. Del Real A., Perez-Campo F.M., Fernandez A.F., Sanudo C., Ibarbia C.G., Perez-Nunez M.I., Criekinge W.V., Braspenning M., Alonso M.A., Fraga M.F., Riancho J.A. Differential analysis of genome-wide methylation and gene expression in mesenchymal stem cells of patients with fractures and osteoarthritis. Epigenetics. 2017; 12(2):113-122. DOI 10.1080/15592294.2016.1271854.
11. Delgado-Calle J., Sanudo C., Bolado A., Fernandez A.F., Arozamena J., Pascual-Carra M.A., Rodriguez-Rey J.C., Fraga M.F., Bonewald L., Riancho J.A. DNA methylation contributes to the regulation of sclerostin expression in human osteocytes. J. Bone Miner. Res. 2012;27(4):926-937. DOI 10.1002/jbmr.1491.
12. Ghayor C., Weber F.E. Epigenetic regulation of bone remodeling and its impacts in osteoporosis. Int. J. Mol. Sci. 2016;17(8):E1446. DOI 10.3390/ijms17091446.
13. Gupta R., Nagarajan A., Wajapeyee N. Advances in genome-wide DNA methylation analysis. BioTechniques. 2010;49(4):3-11. DOI 10.2144/000113493.
14. Harvey N., Dennison E., Cooper C. Osteoporosis: a lifecourse approach. J. Bone Miner. Res. 2014;29(9):1917-1925. DOI 10.1002/jbmr.2286.
15. Hussmann D., Hansen L.L. Methylation-Sensitive High Resolution Melting (MS-HRM). Methods Mol. Biol. 2018;1708:551-571. DOI 10.1007/978-1-4939-7481-8_28.
16. Ku J.L., Jeon Y.K., Park J.G. Methylation-specific PCR. Methods Mol. Biol. 2011;791:23-32. DOI 10.1007/978-1-61779-316-5_3.
17. Kurdyukov S., Bullock M. DNA methylation analysis: choosing the right method. Biology. 2016;5(1):3. DOI 10.3390/biology5010003.
18. Lee J.Y., Lee Y.M., Kim M.J., Choi J.Y., Park E.K., Kim S.Y., Lee S.P., Yang J.S., Kim D.S. Methylation of the mouse DIx5 and Osx gene promoters regulates cell type-specific gene expression. Mol. Cell. 2006;22(2):182-188.
19. Li P., Demirci F., Mahalingam G., Demirci C., Nakano M., Meyers B.C. An integrated workflow for DNA methylation analysis. J. Genet. Genomics. 2013;40(5):249-260. DOI 10.1016/j.jgg.2013.03.010.
20. Li X., Zhang Y., Kang H., Liu W., Liu P., Zhang J., Harris S.E., Wu D. Sclerostin binds to LRP5/6 and antagonizes canonical Wnt signaling. J. Biol. Chem. 2005;280(20):19883-19887. DOI 10.1074/jbc.M413274200.
21. Marini F., Cianferotti L., Brandi M.L. Epigenetic mechanisms in bone biology and osteoporosis: Can they drive therapeutic choices? Int. J. Mol. Sci. 2016;17(8):1329. DOI 10.3390/ijms17081329.
22. Moore L.D., Le T., Fan G. DNA methylation and its basic function. Neuropsychopharmacology. 2013;38(1):23-28. DOI 10.1038/npp.2012.112.
23. Morris J.A., Tsai P.C., Joehanes R., Zheng J., Trajanoska K., Soerensen M., Forgetta V., Castillo-Fernandez J., Frost M., Spector T.D., Christensen K., Christiansen L., Rivadeneira F., Tobias J., Evans D., Kiel D.P., Hsu Y.H., Richards J.B., Bell J.T. Epigenome-wide association of DNA methylation in whole blood with bone mineral density. J. Bone Miner. Res. 2017;32(8):1644-1650. DOI 10.1002/jbmr.3148.
24. Moskalev A.A., Vaiserman A. (Eds.). Epigenetics of Aging and Longevity. London: Acad. Press, 2018. Olkhov-Mitsel E., Zdravic D., Kron K. Novel multiplex MethyLight protocol for detection of DNA methylation in patient tissues and bodily fluids. Sci. Rep. 2014;4:4432. DOI 10.1038/srep04432.
25. Reppe S., Datta H., Gautvik K.M. The Influence of DNA methylation on bone cells. Curr. Genomics. 2015;16(6):384-392. DOI 10.2174/1389202916666150817202913.
26. Reppe S., Lien T.G., Hsu Y.H., Gautvik V.T., Olstad O.K., Yu R., Bakke H.G., Lyle R., Kringen M.K., Glad I.K., Gautvik K.M. Distinct DNA methylation profiles in bone and blood of osteoporotic and healthy postmenopausal women. Epigenetics. 2017;12(8):674687. DOI 10.1080/15592294.2017.1345832.
27. Rojas A., Aguilar R., Henriquez B., Lian J.B., Stein J.L., Stein G.S., van Wijnen A.J., van Zundert B., Allende M.L., Montecino M. Epigenetic control of the bone-master Runx2 gene during osteoblast-lineage commitment by the histone demethylase JARID1B/ KDM5B. J. Biol. Chem. 2015;290(47):28329-28342. DOI 10.1074/jbc.M115.657825.
28. Sozen T., Ozışık L., Başaran N.C. An overview and management of osteoporosis. Eur. J. Rheumatol. 2017;4(1):46-56. DOI 10.5152/eurjrheum.2016.048.
29. Epub 2016 Dec 30. Susan E.C., Jurgen D., Nancy S.G. A real-time PCR assay for DNAmethylation using methylation-specific blockers. Nucleic Acids Res. 2004;32(1):e10. DOI 10.1093/nar/gnh008.
30. Tarantino U., Iolascon G., Cianferotti L., Masi L., Marcucci G., Giusti F., Marini F., Parri S., Feola M., Rao C., Piccirilli E., Zanetti E.B., Cittadini N., Alvaro R., Moretti A., Calafiore D., Toro G., Gimigliano F., Resmini G., Brandi M.L. Clinical guidelines for the prevention and treatment of osteoporosis: summary statements and recommendations from the Italian Society for Orthopaedics and Traumatology. J. Orthop. Traumatol. 2017;18(Suppl.1):3-36. DOI 10.1007/s10195-017-0474-7.
31. Tarfiei G., Noruzinia M., Soleimani M., Kaviani S., Mahmoodinia M.M., Farshdousti Hagh M., Pujol P. ROR2 promoter methylation change in osteoblastic differentiation of mesenchymal stem cells. Cell J. 2011;13(1):11-15.
32. Tu K.N., Lie J.D., Wan C.K.V., Cameron M., Austel A.G., Nguyen J.K., Van K., Hyun D. Osteoporosis: A review of treatment options. Phys. Ther. 2018;43(2):92-104.
33. Wojdacz T.K., Dobrovic A. Methylation-sensitive high resolution melting (MS-HRM): A new approach for sensitive and high-throughput assessment of methylation. Nucleic Acids Res. 2007;35(6):e41. DOI 10.1093/nar/gkm013.
34. Wong H.L., Byun H.M., Kwan J.M., Campan M., Ingles S.A., Laird P.W., Yang A.S. Rapid and quantitative method of allele-specific DNA methylation analysis. BioTechniques. 2006;41(6):734739. DOI 10.2144/000112305.
35. Yi-an C., Mathieu L., Sanaa C., Darci T.B., Daria G., Brent W.Z., Steven G., Thomas J.H., Rosanna W. Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray. Epigenetic. 2013;8(2):203-209. DOI 10.4161/epi.23470.
36. Zhang D., Li Q., Rao L., Yi B., Xu Q. Effect of 5-Aza-2ʹ-deoxycytidine on оdontogenic differentiation of human dental pulp cells. J. Endod. 2015;41(5):640-645. DOI 10.1016/j.joen.2014.12.006.
37. Zhang J.G., Tan L.J., Xu C., Hao H., Qing T., Yu Z., Chuan Q., XiangDing C., Hong-Wen D. Integrative analysis of transcriptomic and epigenomic data to reveal regulation patterns for BMD variation. PLoS One. 2015;10(9):e0138524. DOI 10.1371/journal.pone.0138524.