HIGH-PERFORMANCE SIMULATIONS OF POPULATION-GENETIC PROCESSES IN BACTERIAL COMMUNITIES USING THE HAPLOID EVOLUTIONARY CONSTRUCTOR SOFTWARE
Аннотация
Three high-performance versions of the Haploid Evolutionary Constructor program are presented (http://evol-constructor.bionet.nsc.ru). The software was designed for simulating the functioning and evolution of microbial communities. These high-performance versions are to be run on systems with shared and distributed memory, using CPU and/or GPU. Almost linear acceleration has been achieved on clusters and multi-core CPU. On GPU systems, the simulation time was reduced to several minutes (dozens of hours on CPU).
При поддержке: grants: RFBR 12-07-00671-а, project VI.61.1.2, interdisciplinary SB RAS project 47
Об авторах
Z. S. Mustafin
The Federal research center Institute of cytology and genetics the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
Россия
Россия
Yu. G. Matushkin
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
Novosibirsk National Research State University, Novosibirsk, Russia
Россия
Россия
S. A. Lashin
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
Novosibirsk National Research State University, Novosibirsk, Russia
Россия
Россия
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