Genetic profile of domestic cat (Felis catus L.) population of Aoshima Island (Japan)
https://doi.org/10.18699/VJGB-23-23
Abstract
The paper analyzes the genetic profile of the domestic cat population of the Aoshima Island. The population has been established in the middle of the last century, after a small group of animals was imported for rodent control. Based on three photographs, the genotypes of the cats in three overlapping groups (75, 56, and 70 individuals) were determined. The mutant allele frequencies of the sex-linked O (Orange) locus and the three autosomal loci a, W, and l (Agouti, White, and Long hair) responsible for coat color and length were estimated. The population lacks the mutant alleles d (Dilution locus), W and wg (White), tab (Tabby), TiA (Ticked) present in other populations of Japan. This is an almost monomorphic population with prevailing red and tortoiseshell individuals. Most cats have interrupted stripes (genotype Ti+Ti+TaM-). The island’s population differs from the other populations of the Japanese islands in the frequencies of two mutant alleles, O and a. The frequency of the O allele (q(O) = 0.580) is one of the highest in the region, while the frequency of the a allele (q(a) = 0.276) is two times lower than in the other populations. In both cases, the differences in frequencies between the neighbouring populations are significant (p < 0.0001). An independent study of the same population revealed a similar genetic structure. However, it detected the presence of the d allele, the frequency of the a allele was higher (0.534 versus 0.276, p < 0.020). The genetic profile, frequencies of mutant alleles in the population, and history of its origin indicate a significant influence of the founder effect on the genetic structure of the island’s domestic cat population.
About the Author
S. K. KholinRussian Federation
Vladivostok
References
1. Adalsteinsson S., Blumenberg B. Simultaneous maximum likelihood estimation of the frequency of sexlinked orange and the male ratio in the cat. Carnivore Genet. Newsl. 1984;4:68-77.
2. David V.A., Menotti-Raymond M., Wallace A.C., Roelke M., Kehler J., Leighty R., Eizirik E., Hannah S.S., Nelson G., Schäffer A.A., Connelly C.J., O’Brien S.J., Ryugo D.K. Endogenous retrovirus insertion in the KIT oncogene determines White and White spotting in domestic cats. G3 (Bethesda). 2014;4(10):1881-1891. DOI:10.1534/g3.114.013425.
3. Dreux Ph. The cat population of péninsule Courbet, îles Kerguelen: an example of the founder effect. Polar Rec. 1974;17(106):53-54. DOI:10.1017/S0032247400031405.
4. Eizirik E., David V.A., Buckley-Beason V., Roelke M.E., Schäffer A.A., Hannah S.S., Narfström K., O’Brien S.J., Menotti-Raymond M. Defining and mapping mammalian coat pattern genes: Multiple genomic regions implicated in domestic cat stripes and spots. Genetics. 2010;184(1):267-275. DOI:10.1534/genetics.109.109629.
5. Goncharenko G.G., Lopatin O.E., Manchenko G.P. Mutant color genes in populations of domestic cats of Central Asia and European part of the Soviet Union. Genetika (Moskow). 1985;21(7):1151-1158. (in Russian)
6. Jones E., Horton B.J. Gene frequencies and body weights of feral cats, Felis catus (L.), from five Australian localities and from Macquarie Island. Austral. J. Zool. 1984;32(2):231-237. DOI:10.1071/ZO9840231.
7. Kholin S.K. Bibliography on the population genetics of the domestic cat (Felis catus L.). Vladivostok: Federal Scientific Center of the East Asia Terrestrial Biodiversity Publ., 2018. (in Russian)
8. Kuznetsov V.M. Nei’s methods for analyzing genetic differences between populations. Problemy Biologii Productivnykh Zhivotnykh = Problems of Productive Animal Biology. 2020;1:91-110. (in Russian)
9. Lloyd A.T. Cats from history and history from cats. Endeavour. 1987; 11(3):112-115. DOI:10.1016/0160-9327(87)90197-9.
10. Nozawa K. Genetic polymorphisms in coat color and other morphological traits of the Japanese feral cats. The 5th compilation of smallisland data. Rep. Soc. Res. Native Livest. 2019;29:105-120.
11. Nozawa K., Kawamoto Y. Genetic polymorphisms in coat color and other morphological traits of the Japanese feral cats. The 4th compilation of mainland data. Rep. Soc. Res. Native Livest. 2013;26: 105-139.
12. Nozawa K., Maeda Y., Hasegawa Y., Kawamoto Y. Genetic polymorphisms in coat color and other morphological traits of the Japanese feral cats. Report of the 3rd compilation of data. Rep. Soc. Res. Native Livest. 2000;18:225-268. (in Japanese)
13. Nozawa K., Namikawa T., Kawamoto Y. Genetic polymorphisms in coat color and other morphological traits of the Japanese feral cats. Rep. Soc. Res. Native Livest. 1990;13:51-115. (in Japanese)
14. Peakall R., Smouse P.E. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics. 2012;28(19):2537-2539. DOI:10.1093/bioinformatics/bts460.
15. Robinson R. Mutant gene frequencies in cats of Cyprus. Theor. Appl. Genet. 1972;42(7):293-296. DOI:10.1007/BF00277721.
16. Robinson R. Genetics of colors. In: Cat Genetics. Novosibirsk: Nauka Publ., 1993a;44-53. (in Russian)
17. Robinson R. Coat structure genetics. In: Cat Genetics. Novosibirsk: Nauka Publ., 1993b;53-57. (in Russian)
18. Robinson R., Manchenko G.P. Cat gene frequencies in cities of the USSR. Genetica. 1981;55(1):41-46. DOI:10.1007/BF00134003.
19. Schüler L., Borodin P.M. Influence of sampling methods on estimated gene frequency in domestic cat populations of East-Germany. Arch. Anim. Breed. 1992;35(6):629-634.
20. Searle A.G. Gene frequencies in London’s cats. J. Genet. 1949;49(3): 214-220. DOI:10.1007/BF02986074.
21. Todd N.B., Jeanne R.L. Some cats of São Paulo, Brazil. J. Hered. 1972;63(6):321-323. DOI:10.1093/oxfordjournals.jhered.a108307.
22. Todd N.B., Lloyd A.T. Mutant allele frequencies in the domestic cats of Portugal and the Azores. J. Hered. 1984;75(6):495-497. DOI:10.1093/oxfordjournals.jhered.a109994.
23. Twedt D.J. Influence of survey methods and sample sizes on estimated gene frequencies in domestic cat population. J. Hered. 1983;74(2): 121-123. DOI:10.1093/oxfordjournals.jhered.a109736.
24. van Aarde R.J., Robinson T.J. Gene frequencies in feral cats on Marion Island. J. Hered. 1980;71(5):366-368. DOI:10.1093/oxfordjournals.jhered.a109391.
25. Zhivotovsky L.A. Population Biometry. Moscow: Nauka Publ., 1991. (in Russian)