Поиск сигналов положительного отбора генов циркадных ритмов PER1, PER2, PER3 в различных популяциях людей
https://doi.org/10.18699/vjgb-24-71
Аннотация
Разнообразие географически распределенных человеческих популяций демонстрирует большую вариацию внешних и внутренних признаков индивидов. Такие различия в значительной степени объясняются генетической адаптацией к различным воздействиям окружающей среды, к которым относят изменения климатических условий, колебания условий сна и бодрствования, вариации рациона и другие. Полногеномные данные, полученные от людей различных популяций, дают возможность идентифицировать конкретные генетические участки, ответственные за эти адаптации, и глубже понимать генетическую структуру, лежащую в основе адаптивных характеристик человека. В данной работе проведен поиск сигналов однонуклеотидных полиморфизмов (SNP), находящихся под давлением отбора у людей различных популяций. Для выявления сигналов отбора в различных популяционных группах были исследованы гены PER1, PER2 и PER3, играющие важнейшую роль в координации термогенных функций и регуляции циркадных ритмов, что напрямую отражается на адаптационных способностях организма. Анализ данных осуществляли на основе общедоступных данных из проекта «1000 геномов» (1000 Genomes Project) по 23 популяциям. Для поиска следов отбора был выбран статистический метод XP-EHH (expanded haplotype homozygosity score). Проведенный сравнительный анализ позволил идентифицировать точки, подверженные давлению отбора. Найденные SNP были аннотированы через каталог GWAS, а также вручную, путем анализа интернет-ресурсов и публикаций. Исследование позволяет сделать вывод о том, что условия проживания, климат и другие внешние факторы напрямую влияют на генетическую структуру популяций и варьируют в зависимости от расы и географического местоположения. Кроме того, многие из вариантов отбора в генах PER1, PER2, PER3, по-видимому, регулируют биологические процессы, связанные с основными современными заболеваниями, включая ожирение, онкологию, метаболический синдром, биполярное расстройство личности, депрессию, ревматоидный артрит, сахарный диабет, красную волчанку, инсульт и болезнь Альцгеймера, что делает их крайне интересными объектами для дальнейших исследований, направленных на идентификацию генетически обусловленных причин заболеваний человека.
Об авторах
А. И. МишинаРоссия
Москва
С. Ю. Бакоев
Россия
Москва
А. Ю. Ооржак
Россия
Москва
А. А. Кескинов
Россия
Москва
Ш. Ш. Кабиева
Россия
Москва
А. В. Коробейникова
Россия
Москва
В. С. Юдин
Россия
Москва
М. М. Боброва
Россия
Москва
Д. А. Шестаков
Россия
Москва
В. В. Макаров
Россия
Москва
Л. В. Гетманцева
Россия
Москва
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