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Molecular-genetic mechanisms of the interaction between processes of cell response to mechanical stress and neuronal apoptosis in primary open-angle glaucoma

https://doi.org/10.18699/VJ16.200

Abstract

Glaucoma is a chronic and progressive disease, which affects more than 60 million people worldwide. Primary open-angle glaucoma (POAG) is one of the most common forms of glaucoma. For example, about 2.71 million people in the USA had primary open-angle glaucoma in 2011. Currently POAG is a major cause of irreversible vision loss. In patients with treated open-angle glaucoma the risk of blindness reached to be about 27 %. It is known that the death of optic nerve cells can be triggered by mechanical stress caused by increased intraocular pressure, which induces neuronal apoptosis and is observed in patients with POAG. Currently, there is a large number of scientific publications describing proteins and genes involved in the pathogenesis of POAG, including neuronal apoptosis and the cell response to mechanical stress. However, the molecular- genetic mechanisms underlying the pathophysiology of POAG are still poorly understood. Reconstruction of associative networks describing the functional interactions between these genes/proteins, including biochemical reactions, regulatory interactions, transport, etc., requires the use of methods of automated knowledge extraction from texts of scientific publications. The aim of the work was the analysis of associative networks, describing the molecular-genetic interactions between proteins and genes involved in cell response to mechanical stress (CRMS), neuronal apoptosis and pathogenesis of POAG using ANDSystem, our previous development for automated text analysis. It was shown that genes associated with POAG are statistically significantly more often represented among the genes involved in the interactions between CRMS and neuronal apoptosis than it was expected by random reasons, which can be an explanation for the effect of POAG leading to the retinal ganglion cell death.

About the Authors

O. V. Saik
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


N. A. Konovalova
Tyumen State Medical University
Russian Federation
Tyumen, Russia


P. S. Demenkov
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


N. V. Ivanisenko
Institute of Cytology and Genetics SB RAS Novosibirsk State University
Russian Federation
Novosibirsk, Russia


T. V. Ivanisenko
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


D. E. Ivanoshchuk
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


O. S. Konovalova
Tyumen State Medical University
Russian Federation
Tyumen, Russia


O. A. Podkolodnaya
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


I. N. Lavrik
Institute of Cytology and Genetics SB RAS Institute of Experimental Internal Medicine, Otto von Guericke University
Russian Federation

Novosibirsk, Russia

Magdeburg, Germany



N. A. Kolchanov
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


V. A. Ivanisenko
Institute of Cytology and Genetics SB RAS
Russian Federation
Novosibirsk, Russia


References

1. Abu-Amero K.K., Kondkar A.A., Mousa A., Azad T.A., Sultan T., Osman E.A., Al-Obeidan S.A. Analysis of toll-like receptor rs4986790

2. polymorphism in Saudi patients with primary open angle glaucoma. Ophthalmic Genetics. 2016;1-5. DOI 10.3109/13816810.2016.1151900.

3. Almasieh M., Wilson A.M., Morquette B., Vargas J.L., Di Polo A. The molecular basis of retinal ganglion cell death in glaucoma. Progress in Retinal Eye Research. 2012;31(2):152- 181. DOI 10.1016/j.preteyeres.2011.11.002.

4. Au C.W., Siu M.K., Liao X., Wong E.S., Ngan H.Y., Tam K.F., Chan D.C., Chan Q.K., Cheung A.N. Tyrosine kinase B receptor and BDNF expression in ovarian cancers – effect on cell migration, angiogenesis and clinical outcome. Cancer Letters. 2009;281(2):151-161. DOI 10.1016/j.canlet.2009.02.025.

5. Badorff C., Ruetten H., Mueller S., Stahmer M., Gehring D., Jung F., Ihling C., Zeiher A.M., Dimmeler S. Fas receptor signaling inhibits glycogen synthase kinase 3β and induces cardiac hypertrophy following pressure overload. J. Clin. Investigation. 2002;109(3):373-381. DOI 10.1172/JCI13779.

6. Baroni A., Perfetto B., Ruocco E., Rossano F. Lipoteichoic acid and protein-A from Staphylococcus aureus stimulate release of hepatocyte growth factor (HGF) by human dermal fibroblasts. Archives Dermatol. Research. 1998;290(4):211-214.

7. Borg L.A., Cagliero E.N., Sandler S.T., Welsh N., Eizirik D.L. Interleukin-1 beta increases the activity of superoxide dismutase in rat pancreatic islets. Endocrinology. 1992;130(5):2851-2857. DOI 10.1210/endo.130.5.1533363.

8. Calandrella N., Scarsella G., Pescosolido N., Risuleo G. Degenerative and apoptotic events at retinal and optic nerve level after experimental induction of ocular hypertension. Mol. Cell. Biochemistry. 2007; 301(1-2):155-163. DOI 10.1007/s11010-006-9407-0.

9. Chu S.H., Feng D.F., Ma Y.B., Zhu Z.A., Zhang H., Qiu J.H. Stabilization of hepatocyte growth factor mRNA by hypoxia-inducible factor 1. Mol. Biol. Reports. 2009;36(7):1967-1975. DOI 10.1007/s11033-008-9406-1.

10. Demenkov P.S., Ivanisenko T.V., Kolchanov N.A., Ivanisenko V.A. ANDVisio: a new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. In Silico Biology. 2012;11(3, 4):149-161. DOI 10.3233/ISB-2012-0449.

11. Dorn G.W., Kirshenbaum L.A. Cardiac reanimation: targeting cardiomyocyte death by BNIP3 and NIX/BNIP3L. Oncogene. 2008;27: 158-167. DOI 10.1038/onc.2009.53.

12. Egea J., Klein R. Bidirectional Eph–ephrin signaling during axon guidance. Trends in Cell Biology. 2007;17(5):230-238. DOI 10.1016/j.tcb.2007.03.004.

13. Elmore S. Apoptosis: a review of programmed cell death. Toxicologic Pathology. 2007;35(4):495-516. DOI 10.1080/01926230701320337.

14. Fu-lan W.E., Jie G.E., Chun-ling W.A., Hui W.A., Ben-jun Z.H., Fan Z.H. Expression of HIF-1α and VEGF in human dental pulp cells under mechanical stretch. Shanghai J. Stomatology. 2012;21(5).

15. Gawri R., Rosenzweig D.H., Krock E., Ouellet J.A., Stone L.S., Quinn T.M., Haglund L. High mechanical strain of primary intervertebral disc cells promotes secretion of inflammatory factors associated with disc degeneration and pain. Arthritis Research Therapy. 2014;16(1):1. DOI 10.1186/ar4449.

16. Genander M., Frisén J. Ephrins and Eph receptors in stem cells and cancer. Current Opinion Cell Biology. 2010;22(5):611-616. DOI 10.1016/j.ceb.2010.08.005.

17. Glossop J.R., Cartmell S.H. Effect of fluid flow-induced shear stress on human mesenchymal stem cells: differential gene expression of IL1B and MAP3K8 in MAPK signaling. Gene Expression Patterns. 2009;9(5):381-388. DOI 10.1016/j.gep.2009.01.001.

18. Itakura T., Peters D.M., Fini M.E. Glaucomatous MYOC mutations activate the IL-1/NF-κB inflammatory stress response and the glaucoma marker SELE in trabecular meshwork cells. Mol. Vision. 2015; 21:1071.

19. Ivanisenko V.A., Saik O.V., Ivanisenko N.V., Tiys E.S., Ivanisenko T.V., Demenkov P.S., Kolchanov N.A. ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Systems Biology. 2015;9(2):1. DOI 10.1186/1752-0509-9-S2-S2.

20. Jindal V. Glaucoma: an extension of various chronic neurodegenerative disorders. Mol. Neurobiology. 2013;48(1):186-189. DOI 10.1007/s12035-013-8416-8.

21. Jung J.E., Kim G.S., Chen H., Maier C.M., Narasimhan P., Song Y.S., Niizuma K., Katsu M., Okami N., Yoshioka H., Sakata H. Reperfusion and neurovascular dysfunction in stroke: from basic mechanisms to potential strategies for neuroprotection. Mol. Neurobiology. 2010;41(2-3):172-179. DOI 10.1007/s12035-010-8102-z.

22. Kerr J.F.R., Wyllie A.H., Currie A.R. Apoptosis: a basic biological phenomenon with wide- ranging implications in tissue kinetics. Br. J. Cancer. 1972;26(4):239.

23. Klein A., Maldonado C., Vargas L.M., Gonzalez M., Robledo F., de Arce K.P., Muñoz F.J., Hetz C., Alvarez A.R., Zanlungo S. Oxidative stress activates the c-Abl/p73 proapoptotic pathway in Niemann- Pick type C neurons. Neurobiol. Disease. 2011;41(1):209-18. DOI 10.1016/j.nbd.2010.09.008.

24. Kullander K., Klein R. Mechanisms and functions of Eph and ephrin signalling. Nature Rev. Mol. Cell Biology. 2002;3(7):475-486. DOI 10.1038/nrm856.

25. Lascaratos G., Garway-Heath D.F., Willoughby C.E., Chau K.Y., Schapira A.H. Mitochondrial dysfunction in glaucoma: understanding genetic influences. Mitochondrion. 2012;12(2):202- 212. DOI 10.1016/j.mito.2011.11.004.

26. Lu S., Török H.P., Gallmeier E., Kolligs F.T., Rizzani A., Arena S., Göke B., Gerbes A.L., De Toni E.N. Tivantinib (ARQ 197) affects the apoptotic and proliferative machinery downstream of c-MET: role of Mcl-1, Bcl-xl and Cyclin B1. Oncotarget. 2015;6(26):22167. DOI 10.18632/oncotarget.4240.

27. Maity-Kumar G., Thal D.R., Baumann B., Scharffetter-Kochanek K., Wirth T. Neuronal redox imbalance results in altered energy homeostasis and early postnatal lethality. FASEB J. 2015;29(7):2843-2858. DOI 10.1096/fj.14-265157.

28. Matsopoulos G.K., Asvestas P.A., Delibasis K.K., Mouravliansky N.A., Zeyen T.G. Detection of glaucomatous change based on vessel shape analysis. Comput. Med. Imaging Graphics. 2008;32(3):183-192.DOI 10.1016/j.compmedimag.2007.11.003.

29. McCubrey J.A., Steelman L.S., Bertrand F.E., Davis N.M., Sokolosky M., Abrams S.L., Montalto G., D’Assoro A.B., Libra M., Nicoletti F., Maestro R. GSK-3 as potential target for therapeutic intervention in cancer. Oncotarget. 2014;5(10):2881-2911. DOI 10.18632/oncotarget.2037.

30. Nakagami H., Morishita R., Yamamoto K., Taniyama Y., Aoki M., Yamasaki K., Matsumoto K., Nakamura T., Kaneda Y., Ogihara T. Hepatocyte growth factor prevents endothelial cell death through inhibition of bax translocation from cytosol to mitochondrial membrane. Diabetes. 2002;51(8):2604-2611.

31. Ozaki T., Kubo N., Nakagawara A. p73-binding partners and their functional significance. Intern. J. Proteomics. 2010. DOI 10.1155/2010/283863.

32. Paduch R., Gil J.J., Niedziela P. Hepatocyte growth factor (HGF), heat shock proteins (HSPs) and multidrug resistance protein (MRP) expression in co-culture of colon tumor spheroids with normal cells after incubation with interleukin-1β (IL-1β) and/or camptothecin (CPT-11). Indian J. Exp. Biol. 2010;48(4):354-364.

33. Park J., Park S.Y., Shin E., Lee S.H., Kim Y.S., Lee D.H., Roh G.S., Kim H.J., Kang S.S., Cho G.J., Jeong B.Y. Hypoxia inducible factor- 1α directly regulates nuclear clusterin transcription by interacting with hypoxia response elements in the clusterin promoter. Mol. Cells. 2014;37(2):178-186. DOI 10.14348/molcells.2014.2349.

34. Quigley H.A. Neuronal death in glaucoma. Progress Retinal Eye Res. 1999;18(1):39-57.

35. Quigley H.A. Glaucoma. Lancet. 2011;377(9774):1367-1377. DOI 10.1016/S0140-6736(10)61423-7.

36. Rong S.S., Chen L.J., Leung C.K., Matsushita K., Jia L., Miki A., Chiang S.W., Tam P.O., Hashida N., Young A.L., Tsujikawa M. Ethnic specific association of the CAV1/CAV2 locus with primary openangle glaucoma. Sci. Rep. 2016;6:27837. DOI 10.1038/srep27837.

37. Shao Q., Arakaki N., Ohnishi T., Nakamura O., Daikuhara Y. Effect of hepatocyte growth factor/scatter factor on lipogenesis in adult rat hepatocytes in primary culture. J. Biochemistry. 1996;119(5): 940-946.

38. Slemmer J.E., Zhu C., Landshamer S., Trabold R., Grohm J., Ardeshiri A., Wagner E., Sweeney M.I., Blomgren K., Culmsee C., Weber J.T. Causal role of apoptosis-inducing factor for neuronal cell death following traumatic brain injury. Am. J. Pathol. 2008;173(6): 1795-1805. DOI 10.2353/ajpath.2008.080168.

39. Sun R.J., Muller S., Zhuang F.Y., Stoltz J.F., Wang X. Caveolin-1 redistribution in human endothelial cells induced by laminar flow and cytokine. Biorheology. 2003;40(1,2,3):31-39.

40. Takano Y., Shi D., Shimizu A., Funayama T., Mashima Y., Yasuda N., Fukuchi T., Abe H., Ideta H., Zheng X., Shiraishi A. Association of Toll-like receptor 4 gene polymorphisms in Japanese subjects with primary open-angle, normal-tension, and exfoliation glaucoma. Am. J. Ophthalmology. 2012;154(5):825-832. DOI 10.1016/j.ajo.2012.03.050.

41. Taniguchi F., Harada T., Deura I., Iwabe T., Tsukihara S., Terakawa N. Hepatocyte growth factor promotes cell proliferation and inhibits progesterone secretion via PKA and MAPK pathways in a human granulosa cell line. Mol. Reproduction Development. 2004;68(3):335-344. DOI 10.1002/mrd.20076.

42. Uchida K., Nakajima H., Takamura T., Furukawa S., Kobayashi S., Yayama T., Baba H. Gene expression profiles of neurotrophic factors in rat cultured spinal cord cells under cyclic tensile stress. Spine. 2008;33(24):2596-2604. DOI 10.1097/BRS.0b013e31818917af.

43. Wang F., Xiong L., Huang X., Zhao T., Wu L.Y., Liu Z.H., Ding X., Liu S., Wu Y., Zhao Y., Wu K. miR-210 suppresses BNIP3 to protect against the apoptosis of neural progenitor cells. Stem Cell Res. 2013;11(1):657-667. DOI 10.1016/j.scr.2013.04.005.

44. Zhao Y., Zhu L., Yu S., Zhu J., Wang C. CaMKII inhibition promotes neuronal apoptosis by transcriptionally upregulating Bim expression. NeuroReport. 2016;27(14):1018-1023. DOI 10.1097/WNR.0000000000000648.

45. Zhou Y., Millward-Sadler S.J., Lin H., Robinson H., Goldring M., Salter D.M., Nuki G. Evidence for JNK-dependent up-regulation of proteoglycan synthesis and for activation of JNK1 following cyclical mechanical stimulation in a human chondrocyte culture model. OsteoArthritis Cartilage. 2007;15(8):884-893. DOI 10.1016/j.joca.2007.02.001.

46. Zhou Y., Shuai P., Li X., Liu X., Wang J., Yang Y., Hao F., Lin H., Zhang D., Gong B. Association of SOD2 polymorphisms with primary open angle glaucoma in a Chinese population. Ophthalmic Genetics. 2015;36(1):43-49. DOI 10.3109/13816810.2014.985844.


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