Идентификация и характеристика мРНК генов рецептор-подобных киназ MhyGSO1 и MhyGSO2 в паразитическом растении Monotropa hypopitys на стадии цветения
https://doi.org/10.18699/VJ17.250
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Полный текст:
Аннотация
Ключевые слова
Об авторах
А. В. ЩенниковаРоссия
Москва
Е. З. Кочиева
Россия
Москва
А. В. Белецкий
Россия
Москва
М. А. Филюшин
Россия
Москва
О. А. Шульга
Россия
Москва
Н. В. Равин
Россия
Москва
К. Г. Скрябин
Россия
Москва
Список литературы
1. Abe M., Katsumata H., Komeda Y., Takahashi T. Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Development. 2003;130(4):635-643. https://doi.org/10.1242/dev.00292.
2. Aharoni A., Dixit S., Jetter R., Thoenes E., van Arkel G., Pereira A. The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell. 2004;16(9):2463-2480. https://doi.org/10.1105/tpc.104.022897.
3. Aichinger E., Kornet N., Friedrich T., Laux T. Plant stem cell niches. Annu. Rev. Plant Biol. 2012;63:615-636. https://doi.org/10.1146/annurevarplant-042811-105555.
4. Campilho A., Garcia B., Toorn H.V., Wijk H.V., Campilho A., Scheres B. Time-lapse analysis of stem-cell divisions in the Arabidopsis thaliana root meristem. Plant J. 2006;48(4):619-627. https://doi.org/10.1111/j.1365-313X.2006.02892.x.
5. De Giorgi J., Piskurewicz U., Loubery S., Utz-Pugin A., Bailly C., Mène-Saffrané L., Lopez-Molina L. An endosperm-associated cuticle is required for Arabidopsis seed viability, dormancy and early control of germination. PLoS Genet. 2015;11(12):e1005708. https://doi.org/10.1371/journal.pgen.1005708.
6. Dodueva I.E., Tvorogova V.E., Azarakhsh М., Lebedeva M.A., Lutova L.A. Plant stem cells: unity and diversity. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov Journal of Genetics and Breeding. 2016;20(4):441-458. https://doi.org/10.18699/VJ16.172. (in Russian)
7. Drisch R.C., Stahl Y. Function and regulation of transcription factors involved in root apical meristem and stem cell maintenance. Front. Plant Sci. 2015;6:505. https://doi.org/10.3389/fpls.2015.00505.
8. Fiume E., Guyon V., Remoué C., Magnani E., Miquel M., Grain D., Lepiniec L. TWS1, a novel small protein, regulates various aspects of seed and plant development. Plant Physiol. 2016;172(3):1732-1745. https://doi.org/10.1104/pp.16.00915.
9. Haas B.J., Papanicolaou A., Yassour M., Grabherr M., Blood P.D., Bowden J., Couger M.B., Eccles D., Li B., Lieber M., Macmanes M.D., Ott M., Orvis J., Pochet N., Strozzi F., Weeks N., Westerman R., William T., Dewey C.N., Henschel R., Leduc R.D., Friedman N., Regev A. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat. Protocols. 2013;8(8):1494-1512. https://doi.org/10.1038/nprot.2013.084.
10. Hooker T.S., Lam P., Zheng H., Kunst L. A core subunit of the RNAprocessing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis. Plant Cell. 2007;19(3):904-913. https://doi.org/10.1105/tpc.106.049304.
11. Javelle M., Vernoud V., Rogowsky P.M., Ingram G.C. Epidermis: the formation and functions of a fundamental plant tissue. New Phytol. 2011;189(1):17-39. https://doi.org/10.1111/j.1469-8137.2010.03514.x.
12. Jinn T.L., Stone J.M., Walker J.C. HAESA, an Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission. Genes Dev. 2000;14(1):108-117. https://doi.org/10.1101/gad.14.1.108.
13. Kwak S.H., Schiefelbein J. The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis. Dev. Biology. 2007;302:118-131. https://doi.org/10.1016/j.ydbio.2006.09.009.
14. Kwak S.H., Schiefelbein J. TRIPTYCHON, not CAPRICE, participates in feedback regulation of SCM expression in the Arabidopsis root epidermis. Plant Signal. Behav. 2014;9(11):e973815. https://doi.org/10.4161/15592324.2014.973815.
15. Leake J.R. The biology of myco-heterotrophic (‘saprophytic’) plants. New Phytol. 1994;127:171-216. https://doi.org/10.1111/j.1469-8137.1994.tb04272.x.
16. Leake J.R., McKendrick S.L., Bidartondo M., Read D.J. Symbiotic germination and development of the myco-heterotroph Monotropa hypopitys in nature and its requirement for locally distributed Tricholoma spp. New Phytol. 2004;163(2):405-423. https://doi.org/10.1111/j.1469-8137.2004.01115.x.
17. Li B., Dewey C.N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 2011;12:323. https://doi.org/10.1186/1471-2105-12-323.
18. Mizuno S., Osakabe Y., Maruyama K., Ito T., Osakabe K., Sato T., Shinozaki K., Yamaguchi-Shinozaki K. Receptor-like protein kinase 2(RPK 2) is a novel factor controlling anther development in Arabidopsis thaliana. Plant J. 2007;50(5):751-766. https://doi.org/10.1111/j.1365-313X.2007.03083.x.
19. Moussu S., San-Bento R., Galletti R., Creff A., Farcot E., Ingram G. Embryonic cuticle establishment: the great (apoplastic) divide. Plant Signal. Behav. 2013;8(12):e27491. https://doi.org/10.4161/psb.27491.
20. Nodine M.D., Tax F.E. Two receptor-like kinases required together for the establishment of Arabidopsis cotyledon primordia. Dev. Biology. 2008;314(1):161-170. https://doi.org/10.1016/j.ydbio.2007.11.021.
21. Ogasawara H., Kaimi R., ColasantiJ., KozakiA. Activity of transcription factor JACKDAW is essential for SHR/SCR-dependent activation of SCARECROW and MAGPIE and is modulated by reciprocal interactions with MAGPIE, SCARECROW and SHORT ROOT. Plant Mol. Biol. 2011;77(4-5):489-499. https://doi.org/10.1007/s11103-011-9826-5.
22. Oshchepkova E.A., Omelyanchuk N.A., Savina M.S., Pasternak T., Kolchanov N.A., Zemlyanskaya E.V. Systems biology analysis of the WOX5 gene and its functions in the root stem cell niche. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov Journal of Genetics and Breeding. 2016;20(4):459-474. https://doi.org/10.18699/VJ16.173. (in Russian)
23. Racolta A., Bryan A.C., Tax F.E. The receptor-like kinases GSO1 and GSO2 together regulate root growth in Arabidopsis through control of cell division and cell fate specification. Dev. Dynamics. 2014;243(2):257-278. https://doi.org/10.1002/dvdy.24066.
24. Ravin N.V., Gruzdev E.V., Beletsky A.V., Mazur A.M., Prokhortchouk E.B., Filyushin M.A., Kochieva E.Z., Kadnikov V.V., Mardanov A.V., Skryabin K.G. The loss of photosynthetic pathways in the plastid and nuclear genomes of the non-photosynthetic mycoheterotrophic eudicot Monotropa hypopitys. BMC Plant Biol. 2016;16(Suppl. 3):238. https://doi.org/10.1186/s12870-016-0929-7.
25. San-Bento R., Farcot E., Galletti R., Creff A., Ingram G. Epidermal identity is maintained by cell-cell communication via a universally active feedback loop in Arabidopsis thaliana. Plant J. 2014;77(1):46-58. https://doi.org/10.1111/tpj.12360.
26. Schoof H., Lenhard M., Haecker A., Mayer K.F., Jürgens G., LauxT. The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell. 2000;100(6):635-644. https://doi.org/10.1016/S0092-8674(00)80700-X.
27. Shiu S.H., Bleecker A.B. Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant Physiol. 2003;132(2):530-543. https://doi.org/10.1104/pp.103.021964.
28. Song S.K., Ryu K.H., Kang Y.H., Song J.H., Cho Y.H., Yoo S.D., Schiefelbein J., Lee M.M. Cell fate in the Arabidopsis root epidermis is determined by competition between WEREWOLF and CAPRICE. Plant Physiol. 2011;157(3):1196-1208. https://doi.org/10.1104/pp.111.185785.
29. Stahl Y., Grabowski S., Bleckmann A., Kühnemuth R., WeidtkampPeters S., Pinto K.G., Kirschner G.K., Schmid J.B., Wink R.H. Hülsewede A., Felekyan S., Seidel C.A., Simon R. Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes. Curr. Biol. 2013;23(5):362-371. https://doi.org/10.1016/j.cub.2013.01.045.
30. Takayama S., Sakagami Y. Peptide signalling in plants. Curr. Opin. Plant Biol. 2002;5(5):382-387. https://doi.org/10.1016/S1369-5266(02)00284-4.
31. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 2013;30(12):2725-2729. https://doi.org/10.1093/molbev/mst197.
32. Torii K.U., Mitsukawa N., Oosumi T., Matsuura Y., Yokoyama R., Whittier R.F., Komeda Y. The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell. 1996;8(4):735-746. https://doi.org/10.1105/tpc.8.4.735.
33. Tsuwamoto R., Fukuoka H., Takahata Y. GASSHO1 and GASSHO2 encoding a putative leucine-rich repeat transmembrane-type receptor kinase are essential for the normal development of the epidermal surface in Arabidopsis embryos. Plant J. 2008;54(1):30-42. https://doi.org/10.1111/j.1365-313X.2007.03395.x.
34. Wallace G.D. Studies of the Monotropoidiae (Ericaceae): taxonomy and distribution. Wassman J. Biology. 1975;33:1-88.
35. Wildwater M., Campilho A., Perez-Perez J.M., Heidstra R., Blilou I., Korthout H., Chatterjee J., Mariconti L., Gruissem W., Scheres B. The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. Cell. 2005;123(7):1337-1349. https://doi.org/10.1016/j.cell.2005.09.042.
36. Yokoyama R., Takahashi T., Kato A., Torii K.U., Komeda Y. The Arabidopsis ERECTA gene is expressed in the shoot apical meristem and organ primordia. Plant J. 1998;15(3):301-310. https://doi.org/10.1046/j.1365-313X.1998.00203.x.
37. Zuckerkandl E., Pauling L. Evolutionary Divergence and Convergence in Proteins: Symp. held at the Inst. of Microbiology of Rutgers. N. Y.: Acad. Press, 1965;97-166.