Association of a non-synonymous substitution in the condensin NCAPG gene with traits of eggs in laying hens
https://doi.org/10.18699/VJ16.111
Abstract
One of the most important areas of research in the biology and genetics of farmed animals is one of identification of genes controlling the expression of traits with practical importance for animal breeding. For most of these characteristic features, wide variation in gene expression in specific loci, which are called quantitative trait loci (QTL), is typical. Eggs have been researched for decades due to their importance for the reproduction of birds, as well as for its widespread use in pharmaceutical, cosmetic and food industries. Breeding hens and cross-lines is a necessary step for producing eggs with desired quality. The results of this work are recommended for use to create systems of molecular markers for marker selection of layers and obtain new lines and cross hens with larger mass eggs. Compared to existing conventional systems of selecting layers on this basis, this will eliminate the assessment of the genotype of male progeny, which will significantly reduce breeding time. The system of markers will appear as a set of primers for detection of gene alleles that have a significant impact on the characteristics as above. The use of the molecular markers of high-performance systems for direct selection on the basis of domestic chicken eggs would lead to substantial progress in biotechnology poultry and help avoid having to purchase similar systems from outside the country. The association of the condensin NCAPG gene with the egg traits of domestic chicken has been studied. Associations of the SNP alleles of the rs14491030 marker localized in exon 8 of the NCAPG gene with the trait “the weight eggs”, p < 0.001, as well as with the elastic deformation of the egg shell, p < 0.026, have been found. It has been found that a single nucleotide nonsynonymous A G substitution leads to a significant increase in egg weight. The marker SNP rs14491030 with the observed significant effect on the trait «egg weight» can be recommended for use in breeding of laying hens. Calculations of the relative fitness of genotypes of the marker SNP rs14491030 suggest natural selection for heterozygotes. The results obtained are discussed in connection with the role of the canonical condensin complex in the compaction of chromatin and segregation of chromosomes.
About the Authors
O. Yu. BarkovaRussian Federation
M. G. Smaragdov
Russian Federation
References
1. Ayala F. Vvedenie v populyatsionnuyu genetiku [Introduction to Population Genetics]. Мoscow, Mir, 1984.
2. Eberlein A., Takasuga A., Setoguchi K., Pfuhl R., Flisikowski K., Fries R., Klopp N., Furbass R., Weikard R., Kuhn C. Dissection of genetic factors modulating fetal growth in cattle indicates a substantial role of the non-SMC condensin I complex, subunit G (NCAPG) gene. Genetics. 2009;183(3):951-964.
3. Goraga Z.S., Nassar M.K., Brockmann G.A. Quantitative trait segregating in crosses between New Hampshire and White Leghorn chicken lines: I. egg production traits. Anim. Genet. 2011;43:183-189.
4. Hirano T. Condensins: Organizing and segregating the genome. Curr. Biol. 2005;15:265-275.
5. Hirano T. At the heart of the chromosome: SMC proteins in action. Nat. Rev. Mol. Cell Biol. 2006;7:311-322.
6. Hirano T., Kobayashi R., Hirano M. Condensins, chromosome condensation protein complexes containing XCAP-C, XCAP-E and a Xenopus homolog of the Drosophila Barren protein. Cell. 1997;89: 511-521.
7. Kim J.H., Zhang T., Wong N.C., Davidson N., Maksimovic J., Oshlack A. Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes. Nat. Commun. 2013;4:2537.
8. Lindholm-Perry A.K., Sexten A.K., Kuehn L.A., Smith T.P., King D.A., Shackelfold S.D., Wheeler T.I., Ferrel C.L., Jenkins T.G., Snelling W.M., Freetly H.C. Association, effects and validation of polymorphisms within the NCAPG – LCORL locus located on BTA6 with feed intake, gain, meat and carcass traits in beef cattle. BMC Genetics. 2011;12:103.
9. Necsulea A., Kaessmann H. Evolutionary dynamics of coding and noncoding transcriptomes. Annu. Rev. Genet. 2014;15:734-748.
10. Neuwald A.F., Hirano T. HEAT repeats associated with condensins, cohesins and other chromosome-related complexes. Genome. 2000;10: 1445-1452.
11. Pryce J.E., Hayes B.J., Bolorman S., Goddard M.E. Polymorphic regions affecting human height also control stature in cattle. Genetics. 2011;187:981-984.
12. Sasaki O., Odawara S., Takahashi H., Nirasava K., Oyamada Y., Yamamoto R., Ishi K., Nagamine Y., Takeda H., Kobayashi E., Furukawa T. Genetic mapping of quantitative trait loci affecting body weight, egg character and egg production in F2 intercross chickens. Anim. Genet. 2004;35:188-194.
13. Schreiweis M.A., Hester P.Y., Settar P., Moody D.E. Identification of quantitative trait loci associated with egg quality, egg production, and body weight in F2 resource population of chickens. Anim. Genet. 2005;37:106-112.
14. Setoguchi K., Furata M., Hirano T., Nagao T., Watanabe T., Sugimoto Y., Takasuga A. Cross-breed comparisons identified a critical 591- kb region for bovine carcass weight QTL (CW-2) on chromosome 6 and the Ile-442-Met substitution in NCAPG as a positional candidate. BMC Genetics. 2009;10:43.
15. Signer-Hasler H., Flury C., Haase B., Simianer H., Leeb T., Rieder S. А genome-wide association study reveals loci influencing height and other conformation traits in horses. J. Pone. 2012; 7(5):372-382.
16. Sutani T., Yuasa T., Tomonaga T., Dohmae N., Takio K., Yanagida M. Fission yeast condensin complex: Essential roles of non-SMC subunits for condensation and cdc2 phosphorylation of Cut3/SMC4. Genes Dev. 1999;13:2271-2283.
17. Tuiskula-Haavisto M., Honkatukia M., Vilkki J. Mapping of quantitative trait loci affecting quality and production traits in egg layers. Poultry Sci. 2002;81:919-927.
18. Weikard R., Almaier E., Suhre K., Weinberg K.M., Hammon H.M., Albreecht E., Setoguchi K., Takasuga A., Kuhn C. Metabolomic profiles indicate distinct physiological pathways affected by two loci with major divergent effect on Bos Taurus growth and lipid deposition. Physiol. Genomic. 2010;42A(2):79-88.
19. Weller J.I. Quantitative trait loci analysis in animals, second edition. L.: CABI Publ., 2012.
20. Wolc A., Arango J., Settar P., Fulton J.E., O’Sullivan N.P., Preisinger R., Habier D., Fernando R., Garrick D.J., Hill W.G., Dekkers J.C. Genome – wide association analysis and genetic architecture of egg weight and egg uniformity in layer chickens. Аnimal Genetics. 2012;43:87-96.
21. Wood A.J., Severson A.F., Meyer B.J. Condensin and cohesin complexity: The expanding repertoire of functions. Nat. Rev. Genet. 2010; 11:391-404.
22. Wu G., Bazer F.W., Davis T.A., Kim S.W., Li P., Rhoads J.M.,
23. Smith S.B., Spencer T.E., Yin Y. Arginine metabolism and nutrition in growth, health and disease. Amino Acids. 2009;37(1):153-168.
24. Xing H., Vanderford N.L., Sarge K.D. The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action. Nat. Cell Biol. 2008;10:1318-1323.