HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR
Abstract
The results of the development of a high-throughput version of the software package Haploid Evolutionary Constructor (HEC), available at http://evol-constructor.bionet.nsc.ru, are presented. The software is used to simulate the functioning and evolution of prokaryotic communities. A parallel version of the software package was created using the MPI technology. The test was performed on a cluster of the Bioinformatics shared access center. The acceleration obtained was almost linear. The simulation time of complex bacterial communities was reduced from dozens of hours to several minutes.
About the Authors
Z. S. Mustafin
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
Novosibirsk National Research State University, Novosibirsk, Russia
Russian Federation
Russian Federation
Yu. G. Matushkin
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
Novosibirsk National Research State University, Novosibirsk, Russia
Russian Federation
Russian Federation
S. A. Lashin
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
Novosibirsk National Research State University, Novosibirsk, Russia
Russian Federation
Russian Federation
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