The metabolomic approach to the comparative analysis of wild and cultivated species of oats (Avena L.)
https://doi.org/10.18699/VJ16.185
Abstract
Seed metabolomic profiles have been investigated in wild and cultivated forms (cultivars) of oat (Avena L.). Seed accessions from the VIR oat collection were used for the research. Metabolomic analysis employed gas liquid chromatography-mass spectrometry (GLC- MS) using an Agilent 6850 chromatographer (USA). The analysis covered the composition and content of organic and fatty acids, amino acids, polyatomic spirits and sugars. The content fluctuation range for the studied groups of compounds was found to be narrower (significantly in some cases) in cultivars than in the wild species. Along with a sharp increase in oleic acid content, cultivars demonstrated a decrease in that of linoleic acid. The general conclusions from the comparison of seed metabolomic profiles in wild species and cultivars are presented below. A number of wild species can be recommended as a potential source of biochemical quality traits for breeding purposes. A series of metabolites (compounds), the content of which changes during domestication or which differentiate wild oat species from cultivars has been identified was found. Along with such well-known healthy food chemical factors as oleic acid, glucose and fructose, etc., differences concerning monoacylglycerol compounds (MAG 16 : 0 and MAG-2 18 : 2, etc.) have been found. The latter have been proposed to be related to the formation of adaptive traits, in particular, resistance to diseases and pests, and to environmental abiotic stresses.
About the Authors
I. G. LoskutovRussian Federation
St.-Petersburg, Russia
T. V. Shelenga
Russian Federation
St.-Petersburg, Russia
A. V. Konarev
Russian Federation
St.-Petersburg, Russia
A. I. Shavarda
Russian Federation
St.-Petersburg, Russia
E. V. Blinova
Russian Federation
St.-Petersburg, Russia
N. I. Dzubenko
Russian Federation
St.-Petersburg, Russia
References
1. Alpat’eva N.V., Gavrilyuk I.P., Leont’eva N.A., Oreshko L.S., Krasil’nikov V.N., Barsukova N.A., Loskutov I.G. Prolamins and celiac disease. Agrarnaya Rossiya = Agricultural Russia. 2004;6:41-49. (in Russian)
2. Alpat’eva N.V., Gubareva N.K. Analysis of biotype composition in soft wheat landraces from the VIR collection in the course of storage and reproduction. Agrarnaya Rossiya = Agricultural Russia. 2002;3: 28-31. (in Russian)
3. Ermakov A.I. (Ed.) Metody biokhimicheskogo issledovaniya rasteniy. [Methods of biochemical evaluation of plants]. Leningrad, Agropromizdat Publ., 1987. (in Russian)
4. Ermakov A.I., Ikonnikova M.I., Lukovnikova G.I., Yarosh N.P. The results and prospects of biochemical research of cultivated plants. Trudy po prikladnoy botanike, genetike i selektsii = Proceedings on Applied Botany, Genetics, and Breeding. 1969;41:326-364. (in Russian)
5. Gu J., Jing L., Ma X., Zhang Z., Guo Q., Li Y. GC–TOF-MS-based serum metabolomic investigations of naked oat bran supplementation in high-fat-diet-induced dyslipidemic rats. J. Nutritional Biochemistry. 2015;26:1509-1519.
6. Konarev A.V. Use of molecular markers in solving problems of genetic resources and breeding. Agrarnaya Rossiya = Agricultural Russia. 2006;6:4-23. (in Russian)
7. Konarev A.V., Khoreva V.I. Biokhimicheskie issledovaniya geneticheskikh resursov rasteniy v VIRe [Biochemical research of plant genetic resources in VIR]. Saint-Petersburg, VIR Publ., 2000. (in Russian)
8. Konarev A.V., Shelenga T.V., Perchuk I.N., Blinova E.V., Loskutov I.G. Characterization of diversity among oat (genus Avena L.) accessions from the VIR collection, an initial material for breeding Fusariumresistant oat varieties. Agrarnaya Rossiya = Agricultural Russia. 2015;5:2-10. (in Russian)
9. Konarev A.V., Yarosh N.P. Nikolai Nikolaevich Ivanov, the founder of the Russian biochemistry of cultivated plants (120th birthday anniversary). Agrarnaya Rossiya = Agricultural Russia. 2005;2:3-4. (in Russian)
10. Krasil’nikov V.N. Current directions of using plant genetic resources in technology for functional and special foods. Agrarnaya Rossiya = Agricultural Russia. 2015;11:36-42. (in Russian)
11. Leonova S., Shelenga T., Hamberg M., Konarev A., Loskutov I., Carlsson A. Analysis of oil composition in cultivars and wild species of Oat (Avena sp.). J. Agric. Food Chemistry. 2008;56:7983-7991.
12. Lokhov P.G., Archakov A.I. Mass-spectrometry methods in metabolomics. Biomeditsinskaya khimiya = Biomedical Chemistry. 2008;54: 497-511. (in Russian)
13. Loskutov I.G. Oves (Avena L.). Rasprostranenie, sistematika, evolyutsiya i selektsionnaya tsennost [Oat (Avena L.): Distribution, taxonomy, evolution and breeding value]. Saint- Petersburg, VIR Publ., 2007. (in Russian)
14. Loskutov I.G., Gubareva N.K., Alpat’eva N.V. Polymorphism of avenin in the evaluation of wild oat species. Agrarnaya Rossiya = Agricultural Russia. 2005;2:43-48. (in Russian)
15. Loskutov I.G., Rines H.W. Avena L. (Ed. C. Kole). Wild Crop Relatives: Genomic & Breeding Resources. Vol. 1. Cereals. Springer, Heidelberg, Berlin, New York, 2011;109-184.
16. Peneva T.I., Konarev V.G., Kobylyansky V.D., Lapikov N.S. Analysis of polymorphism for secalin spectrum in the development of winter rye cultivar Ilmen. Selskokhozyaystvennaya Biologiya = Agricultural Biology. 1998;1:55-62. (in Russian)
17. Perkowski J., Stuper K., Buśko M., Góral T., Kaczmarek A., Jeleń H. Differences in metabolomic profiles of the naturally contaminated grain of barley, oats and rye. J. Cereal Sci. 2012;56:544-551.
18. Sánchez-Martín J., Heald J., Kingston-Smith A., Winters A., Rubiales D., Sanz M., Mur L. A. J., Prats E. A metabolomic study in oats (Avena sativa) highlights a drought tolerance mechanism based upon salicylate signalling pathways and the modulation of carbon, antioxidant and photo-oxidative metabolism. Plant, Cell & Environment. 2015;38:1434- 1452.
19. Shelenga T.V., Konarev A.V., Dzubenko N.I., Malyshev L.L., Takai T. Evaluation of accessions of meadow fescue from the Vavilov Institute of Plant Industry containing symbiotic endophytic fungus of genus Neotyphodium. Doklady Rossiyskoy Akademii Selskokhozyaystvennykh Nauk = Proceedings of the Russian Academy of Agricultural Sciences. 2006;1:20-22. (in Russian)
20. Shelenga T.V., Solov’eva A.E., Shavarda A.L., Konarev A.V. Research of the metabolomes of crops of the VIR collection. Tezisy dokladov mezhdunarodnoy nauchnoy konferentsii, posvyashchennoy 120-letiyu VIR [Abstracts of Intern. sci. conference dedicated to the 120th anniversary of VIR, October 6-8, 2014]. Saint-Petersburg, 2014:98. (in Russian)
21. Shulaev V., Cortes D., Miller G., Mittler R. Metabolomics for plant stress response. Physiologia Рlantarum. 2008;132:199-208.
22. Sitkin S.I., Tkachenko E.I., Vakhitov T.Ya., Oreshko L.S., Zhigalova T.N. Metabolome of blood serum as analyzed by gas chromatography– mass spectrometry (GC–MS) in patients with ulcerative colitis and celiac disease. Eksperimentalnaya i klinicheskaya gastroenterologiya = Experimental and Clinical Gastroenterology. 2013; 12:44-57. (in Russian)
23. Smolikova G.N., Shavarda A.L., Alekseichuk I.V., Chantseva V.V., Medvedev S.S. The metabolomic approach to the assessment of cultivar specificity of Brassica napus L. seeds. Russ. J. Genet.: Appl. Res. 2016;1:78-83.
24. Zelenskaya E.G., Konarev A.V., Loskutov I.G., Gubareva N.K., Strel’chenko P.P. Characterization of avenin polymorphism in oat (Avena sativa L.) landraces from the VIR collection. Agrarnaya Rossiya = Agricultural Russia. 2004;6:50-58. (in Russian)